Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_D16
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   143   1e-34
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   140   9e-34
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.1  
06_03_0543 + 21967787-21970261                                         29   5.4  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.2  
03_02_0766 - 11003746-11003902,11004037-11004281,11004379-110045...    28   9.5  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    28   9.5  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  143 bits (347), Expect = 1e-34
 Identities = 63/105 (60%), Positives = 81/105 (77%)
 Frame = -1

Query: 634 FREPRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 455
           F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLF 179

Query: 454 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESKKDEQQAKEQ 320
           WLLAR VL++RG +    +WDV+VDLFFYRDPEE+K+ E++A  Q
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 728 QRXVXKXPR-TPCTXIXGRFTPGAFXNQIQXAF 633
           QR V K  + T    I GR TPG F NQ+Q +F
Sbjct: 88  QRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  140 bits (340), Expect = 9e-34
 Identities = 61/101 (60%), Positives = 78/101 (77%)
 Frame = -1

Query: 634 FREPRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMW 455
           F EPRLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179

Query: 454 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESKKDEQQ 332
           WLLAR VL++RG +    +WDV+VDLFFYRDPEE+K+ E++
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 728 QRXVXKXPR-TPCTXIXGRFTPGAFXNQIQXAF 633
           QR V K  + T    I GR TPG F NQ+Q +F
Sbjct: 88  QRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 212 TRCSSCFWSTPCSRRMVCPGTR 147
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 463 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 374
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 212 TRCSSCFWSTPCSRRMVCPGTR*VEHN 132
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>03_02_0766 -
           11003746-11003902,11004037-11004281,11004379-11004585,
           11004699-11004861,11005105-11005370
          Length = 345

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 343 PFYFLQGHGRRTNQPQHPSAGHGEAHHEASTLH 441
           PF F++G+G+      H SA    A   A T+H
Sbjct: 99  PFIFVRGNGKGRTSINHESASSHNAESAAFTVH 131


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 478
           V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,123,747
Number of Sequences: 37544
Number of extensions: 353160
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)