Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_D15
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047... 30 2.4
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 30 2.4
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 5.6
09_06_0056 - 20561645-20561920,20562024-20562611,20562698-205630... 29 5.6
04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449 29 5.6
03_02_0551 - 9411085-9411430,9411679-9411800 29 5.6
06_03_1363 - 29576265-29577575 26 6.5
10_08_1026 + 22400551-22401161,22401437-22401632,22401837-224018... 28 7.4
09_04_0385 + 17167174-17167440,17173321-17173962 28 7.4
09_04_0028 - 13928542-13929538,13929736-13929818 28 7.4
11_06_0645 - 25814302-25814759,25814853-25815005,25815032-258152... 28 9.8
05_03_0597 + 16014809-16015120,16015234-16015398,16015497-160159... 28 9.8
04_04_0652 + 26957258-26957354,26957702-26958015 28 9.8
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 28 9.8
>08_02_1508 + 27602104-27602265,27602398-27602449,27603357-27604757,
27604833-27606140,27606594-27607435
Length = 1254
Score = 29.9 bits (64), Expect = 2.4
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Frame = -1
Query: 552 QLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPK 373
Q+ SQ S+F T+ N IS Q T+ D P + +D P + SV +
Sbjct: 976 QMPSQAPLPSSFS-TRNKENGISEAGQTN--TVAPDGLPGPGVPKDAGPQVAGPSVVKSQ 1032
Query: 372 VTMINSQE----MQALKNNQTQSQPKKSQRSXG 286
M + Q L N+Q +SQP++++ G
Sbjct: 1033 KNMNEAYNDGPSTQQLPNDQYRSQPREAKEEQG 1065
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -1
Query: 477 PQQKKPTLDDDDFPSLSMGRDDHP-NIGASSVQPPKVTMINSQEMQALKNNQ 325
P KP L P SMG + ++G +++QPPK +++S+ ++A K +
Sbjct: 496 PSPSKP-LSTKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTE 546
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 329 TKPSRNQRSPSGVXEAFPALSAT---AHSPAAPPQWITVSKGK 210
T S + PSG AFP ++T SPA PP +T+S+ K
Sbjct: 93 TPSSASAPPPSGRHPAFPWGASTHLLIRSPADPPSTVTISRRK 135
>09_06_0056 -
20561645-20561920,20562024-20562611,20562698-20563055,
20563149-20563483,20563593-20563633,20563722-20563932,
20564289-20564348,20564432-20564457,20565066-20565264
Length = 697
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 586 GGGXXGGRGGXPAXXXKGPLRXXPGILVIAPSIY 687
GGG G RGG PL + V+APSI+
Sbjct: 18 GGGGGGRRGGASGSGVVAPLVVLVFLFVLAPSIF 51
>04_04_0353 - 24623452-24623691,24623871-24624134,24624264-24624449
Length = 229
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 552 QLHSQPASASNFRLTQTSGNRISIPPQQKKPTLDDDDF 439
+L + P ASN L + SG R S P+ + P DD+DF
Sbjct: 186 ELFASPQPASNMGLYKASGARQSKKPRVEIPD-DDEDF 222
>03_02_0551 - 9411085-9411430,9411679-9411800
Length = 155
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/76 (23%), Positives = 31/76 (40%)
Frame = -2
Query: 479 HHNRRSQLSTMTISLPSVWGETTIPTSELVVCNLRRSP*SIVKKCKR*KITKPSRNQRSP 300
HH R +ST + PS T+ C++ P +I+++C+ P R
Sbjct: 27 HHQRERDISTALLKRPSSVSARTLLNQYRSACSI-ALPQAILRQCEDIAEPMPHAILRQR 85
Query: 299 SGVXEAFPALSATAHS 252
+ E P +S A +
Sbjct: 86 EDIAEPTPLVSVNART 101
>06_03_1363 - 29576265-29577575
Length = 436
Score = 26.2 bits (55), Expect(2) = 6.5
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +2
Query: 398 PMLGWSSLPILREGKSSSSRVGFFCCGG 481
P W +P LR+G+ S C GG
Sbjct: 253 PAAAWEPIPPLRDGRFSRDAAEAVCSGG 280
Score = 20.6 bits (41), Expect(2) = 6.5
Identities = 7/21 (33%), Positives = 8/21 (38%)
Frame = +2
Query: 242 VRRGSGRWRTAQGTPPXLRWD 304
V R W A PP W+
Sbjct: 238 VARSGATWDPAASPPPAAAWE 258
>10_08_1026 +
22400551-22401161,22401437-22401632,22401837-22401889,
22402369-22402819
Length = 436
Score = 28.3 bits (60), Expect = 7.4
Identities = 25/90 (27%), Positives = 39/90 (43%)
Frame = -1
Query: 480 PPQQKKPTLDDDDFPSLSMGRDDHPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKS 301
PP Q P +DDD++ GRDD P+ +S +P VT + + + + P +
Sbjct: 67 PPSQPDPPIDDDEW-----GRDD-PSASGNS-RPVLVTDEWGEPGVPEPQSTSAADPPTN 119
Query: 300 QRSXGGVPCAVRHRPLPRRTPAVDHRFQRK 211
GG P P P P D+ +R+
Sbjct: 120 DDEWGGDPAP---PPPPPPVPEEDNEEERR 146
>09_04_0385 + 17167174-17167440,17173321-17173962
Length = 302
Score = 28.3 bits (60), Expect = 7.4
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -2
Query: 383 NLRRSP*SIVKKCKR*KITKPSRNQRSPSGVXEAFPALSATAHSPAAPPQWITVSKGKDK 204
N RR ++ +R K T P ++ SGV AFP P P T S G D+
Sbjct: 105 NFRRGEQGLLSGIRRRKATTPQSSKSCGSGVNVAFP----PPLPPLPPEPSATTSSGNDR 160
>09_04_0028 - 13928542-13929538,13929736-13929818
Length = 359
Score = 28.3 bits (60), Expect = 7.4
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = +1
Query: 232 HCGGAAGEWAVADSAGNASXTPXXXXXXXXXXVIF*RLHFLTIDHGDLRRLHTTSSDVGM 411
H G AA WA D++G+ S V ++ + I H DL HT ++ G
Sbjct: 3 HDGTAALGWAARDASGHLSPFSFTRRVQEEDDVTI-KVLYCGICHTDL---HTIKNEWGN 58
Query: 412 VVSPHTEGREIV 447
+ P G EIV
Sbjct: 59 AMYPVVPGHEIV 70
>11_06_0645 -
25814302-25814759,25814853-25815005,25815032-25815214,
25815342-25815531,25815624-25815784,25816136-25816623,
25817035-25817075
Length = 557
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +2
Query: 239 GVRRGSGRWRTAQGT 283
G RRG+GRWR A+G+
Sbjct: 523 GGRRGTGRWRRAEGS 537
>05_03_0597 +
16014809-16015120,16015234-16015398,16015497-16015957,
16016057-16016233,16016331-16016679
Length = 487
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -1
Query: 411 HPNIGASSVQPPKVTMINSQEMQALKNNQTQSQPKKSQRSXGG 283
H N A + QP QE Q +++++ + S +S GG
Sbjct: 142 HTNSDAMAAQPASFPSFKEQEQQVVESSKNGAAAASSNKSGGG 184
>04_04_0652 + 26957258-26957354,26957702-26958015
Length = 136
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = +1
Query: 577 PXDGGGXXGGRGGXPAXXXKGPLRXXPGILVIA 675
P DGGG GGRG G R G LV+A
Sbjct: 73 PEDGGGPRGGRGLGIQRSGNGSCRPAFGWLVLA 105
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 437 GKSSSSRVGFFCCGGIEMRFP 499
G SSS +GF CC +M+FP
Sbjct: 456 GGSSSPTIGFRCCRVSQMKFP 476
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,066,521
Number of Sequences: 37544
Number of extensions: 308556
Number of successful extensions: 1226
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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