Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_D13
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   122   6e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   118   7e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    37   0.004
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    29   0.72 
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   2.9  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  122 bits (294), Expect = 6e-29
 Identities = 58/90 (64%), Positives = 67/90 (74%)
 Frame = -1

Query: 628 REXRXLIVXDPAQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWW 449
           RE R ++V DP  D Q I EAS+VNIPVIALC+TDS    VDIAIP N K   SIGL+W+
Sbjct: 119 REPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWY 178

Query: 448 LLAREVLRLRGVLPRDQRWDVVVDLFFYRD 359
           LLAREVLR+RG L R   WDV+ DL+FYRD
Sbjct: 179 LLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  118 bits (285), Expect = 7e-28
 Identities = 57/90 (63%), Positives = 66/90 (73%)
 Frame = -1

Query: 628 REXRXLIVXDPAQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWW 449
           RE R +IV DP  D Q I EAS+VNIPVIALC+TDS    VD+AIP N K   SIGL W+
Sbjct: 120 REPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWY 179

Query: 448 LLAREVLRLRGVLPRDQRWDVVVDLFFYRD 359
           LLAREVLRLRG + R   W+V+ DL+FYRD
Sbjct: 180 LLAREVLRLRGNISRTTAWEVMPDLYFYRD 209


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 613 LIVXDPAQDHQPIXEASYVNIPVIALCNTDSPXRFVDIAIPCNTKSSHSIGLMWWLLAR 437
           +++ +P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 326 ACCSSFSLSSXVTVEEQINHNIPALVTGKHTTKPQHFTCQQ 448
           A   +  LSS VT   Q+ +N P   T K   K +HF  QQ
Sbjct: 28  ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 544 IALCNTDSPXRFVDIAIPCNTKSSHSI 464
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,789
Number of Sequences: 5004
Number of extensions: 42627
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)