Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_D12
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 142 5e-35
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 138 6e-34
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 30 0.42
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 28 1.7
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces... 27 3.9
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.1
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 142 bits (344), Expect = 5e-35
Identities = 67/103 (65%), Positives = 77/103 (74%)
Frame = -1
Query: 664 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
PG FTN I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N
Sbjct: 107 PGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTN 166
Query: 484 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYR P
Sbjct: 167 NKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209
Score = 30.7 bits (66), Expect = 0.24
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -3
Query: 761 DVFVISSRPFGQRAVLKFXXXXXXXXXXGRFT 666
DV V+S+R +G RAVLKF GRFT
Sbjct: 75 DVCVVSTRTYGHRAVLKFAAHTGATAIAGRFT 106
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 138 bits (335), Expect = 6e-34
Identities = 66/103 (64%), Positives = 76/103 (73%)
Frame = -1
Query: 664 PGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCN 485
PG FTN I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N
Sbjct: 108 PGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPIN 167
Query: 484 TKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 356
K SIGL W+LLAREVLRLRG + R W+V+ DL+FYR P
Sbjct: 168 NKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210
Score = 35.5 bits (78), Expect = 0.008
Identities = 19/32 (59%), Positives = 20/32 (62%)
Frame = -3
Query: 761 DVFVISSRPFGQRAVLKFXXXXXXXXXXGRFT 666
DV VISSRP+G RAVLKF GRFT
Sbjct: 76 DVCVISSRPYGHRAVLKFAAHTGATAIAGRFT 107
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 622 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 443
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 442 AR 437
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 29.9 bits (64), Expect = 0.42
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 351 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
L S+ N+S+T +++ SR ST RS STS AN H K E
Sbjct: 99 LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 574 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 27.9 bits (59), Expect = 1.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 420 VVCFPVTSAGMLWLICSSTVXPEESEKD 337
V+ FP TS+G LI S + PEE KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598
>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 172
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 326 ACCSSFSLSSGXTVEEQINHNIPALVTGKHTTKPQHFTCQQ 448
A + LSS T Q+ +N P T K K +HF QQ
Sbjct: 28 ASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQ 68
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,872,571
Number of Sequences: 5004
Number of extensions: 54795
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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