Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_D11
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 147 2e-36
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 144 1e-35
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 42 1e-04
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.1
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.7
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 25 8.9
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 147 bits (356), Expect = 2e-36
Identities = 69/109 (63%), Positives = 82/109 (75%)
Frame = -1
Query: 646 NQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 467
N I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K
Sbjct: 112 NYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRK 171
Query: 466 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 320
SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 172 SIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = -3
Query: 761 ADVXVXSSRPFGQRAVLKFAAHTRCTXIAGRFTPGAFT 648
ADV V S+R +G RAVLKFAAHT T IAGRFTPG FT
Sbjct: 74 ADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFT 111
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 144 bits (349), Expect = 1e-35
Identities = 68/107 (63%), Positives = 81/107 (75%)
Frame = -1
Query: 646 NQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 467
N I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K
Sbjct: 113 NYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYK 172
Query: 466 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 173 SIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 63.7 bits (148), Expect = 3e-11
Identities = 30/38 (78%), Positives = 31/38 (81%)
Frame = -3
Query: 761 ADVXVXSSRPFGQRAVLKFAAHTRCTXIAGRFTPGAFT 648
ADV V SSRP+G RAVLKFAAHT T IAGRFTPG FT
Sbjct: 75 ADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFT 112
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 41.5 bits (93), Expect = 1e-04
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = -1
Query: 619 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 440
P L+++L+P ++ EA ++P I + +TD+ R V IP N S L+ LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239
Query: 439 AR 434
+R
Sbjct: 240 SR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 369 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 467
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 571 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 461
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 463 IGLMWWLLAREVLRLRGVLPRDQRWD 386
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 408 FPVTSAGML--WLICSSTVTLKKVKRM 334
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 741 ITALRSACCTEVCRAHPVYAY 679
+T LR C T++ +P+Y Y
Sbjct: 302 LTLLRLICTTKILNGNPIYVY 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,868,846
Number of Sequences: 5004
Number of extensions: 56001
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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