Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_D11
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 150 1e-36
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 147 1e-35
09_04_0225 - 15855544-15855727,15855796-15856406 30 1.7
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 3.1
01_01_1003 - 7939376-7939414,7939464-7939568,7939757-7939872,794... 29 3.1
07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926 29 5.3
06_03_0543 + 21967787-21970261 29 5.3
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 28 7.1
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 9.3
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 28 9.3
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 150 bits (363), Expect = 1e-36
Identities = 65/111 (58%), Positives = 86/111 (77%)
Frame = -1
Query: 646 NQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 467
NQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +
Sbjct: 114 NQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRN 173
Query: 466 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 314
SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++A Q
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = -3
Query: 758 DVXVXSSRPFGQRAVLKFAAHTRCTXIAGRFTPGAFT 648
D+ V S+RP+GQRAVLKFA +T IAGR TPG FT
Sbjct: 77 DIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 147 bits (356), Expect = 1e-35
Identities = 63/107 (58%), Positives = 83/107 (77%)
Frame = -1
Query: 646 NQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 467
NQ+Q +F EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K
Sbjct: 114 NQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQ 173
Query: 466 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 326
SIG ++WLLAR VL++RG + +WDV+VDLFFYRDPEE+++ E++
Sbjct: 174 SIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220
Score = 53.2 bits (122), Expect = 2e-07
Identities = 24/37 (64%), Positives = 28/37 (75%)
Frame = -3
Query: 758 DVXVXSSRPFGQRAVLKFAAHTRCTXIAGRFTPGAFT 648
D+ V S+RP+GQRAVLKFA +T IAGR TPG FT
Sbjct: 77 DIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFT 113
>09_04_0225 - 15855544-15855727,15855796-15856406
Length = 264
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = -3
Query: 227 GYRPACCTRCSSC-FWSTPC--SRRMVCPGTR 141
G P+ TRC SC W+T C + R CP TR
Sbjct: 171 GATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 206 TRCSSCFWSTPCSRRMVCPGTR 141
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>01_01_1003 -
7939376-7939414,7939464-7939568,7939757-7939872,
7941494-7942760
Length = 508
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 205 VQQAGRYPQPMKPLAPVFHSSLHGQ 279
V+++ RYP P +PLAP+ S HG+
Sbjct: 223 VEKSVRYPLPPRPLAPICVFSHHGR 247
>07_03_1207 - 24881074-24881906,24882204-24882285,24882921-24882926
Length = 306
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +1
Query: 163 LLEQGVLQKQELQRVQQAGRYPQPMKPLAP 252
LLE+ + KQ+ Q+ QQAG P +P+AP
Sbjct: 178 LLEKLKIAKQQQQQQQQAGPEPPRGEPIAP 207
>06_03_0543 + 21967787-21970261
Length = 824
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 457 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 368
L W++L RE +LRGV P + ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 206 TRCSSCFWSTPCSRRMVCPGTR*VEHN 126
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.9 bits (59), Expect = 9.3
Identities = 26/102 (25%), Positives = 42/102 (41%)
Frame = +3
Query: 369 NKSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMSTNLSGESVLHKAITG 548
N + T S+ + ST+ +N+ + + + A S + S + G
Sbjct: 373 NSGSGTMSGIDAPSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIG 432
Query: 549 MLTYEASVMG*WSCAGSNTIKRRGSRNAAWIWFSKSTWCETS 674
+ + S G WS AGSNT G+ ++ W S ST TS
Sbjct: 433 VASNAGSSSGSWSNAGSNTGTLSGAGSSNW---SSSTSGSTS 471
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 356 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 472
V + Q NIP LVT TTK + F PPH +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,612,778
Number of Sequences: 37544
Number of extensions: 400997
Number of successful extensions: 1015
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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