Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_D08
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672...    31   1.4  
08_01_0125 + 1001397-1001865,1002743-1002810,1003359-1003490,100...    31   1.4  
03_05_0844 + 28139996-28140736                                         30   2.4  
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    29   4.1  
01_06_0475 + 29610268-29610711                                         28   7.2  
12_01_0649 - 5497844-5499727                                           28   9.6  
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           28   9.6  
05_03_0265 - 11293020-11293329,11293911-11294232,11294332-11294455     28   9.6  

>09_06_0351 +
           22466160-22466217,22466514-22467052,22467186-22467293,
           22467391-22467546,22467916-22468131,22468639-22468776,
           22468880-22468981,22469089-22469146,22469346-22469408,
           22469543-22469640
          Length = 511

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -3

Query: 525 SEPPWFVRNVDLHDDLDLESISKYLQSASMRHFDKAARHENPLIVAAGNYIPDPADRMES 346
           S PP   +   L     +  +S Y +S SM  F  +AR   P++ ++ NY+         
Sbjct: 33  SSPPTRDKFSRLTTRTTIFQVSNYSRSTSMERFQLSARFHQPVVDSSTNYLTRWFYNANL 92

Query: 345 SRRRPK-HVISDP 310
            RRR +  + SDP
Sbjct: 93  KRRRIECFLTSDP 105


>08_01_0125 +
           1001397-1001865,1002743-1002810,1003359-1003490,
           1003649-1003810,1003973-1004260
          Length = 372

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = -2

Query: 304 STNGAFRYFKHRSPFSSNPSLATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARL 125
           S NG       R P SS  +L  +G    L+L  S   F P   SG+R RSGG       
Sbjct: 200 SANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGS---FMPTENSGTRSRSGGMSVSLAS 256

Query: 124 LLGFVLATS-SGLSPVSSPTKV 62
             G V+    +GL   +SP ++
Sbjct: 257 PDGRVVGGGVAGLLVAASPVQI 278


>03_05_0844 + 28139996-28140736
          Length = 246

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -2

Query: 199 PLSFSP----DLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSSPTKVKATLK-*PLG 35
           PLSF P    D   G R  +G R+C   L   +  A + G+    +PT  KA  +  PLG
Sbjct: 21  PLSFLPVDHADYSGGRRMEAGARWCSDSLARRWAKA-AGGVRAPPTPTLAKAERRQAPLG 79

Query: 34  LS 29
           LS
Sbjct: 80  LS 81


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = -2

Query: 244 LATKGSTSKLTLRHSPLSFSPDLLSGSRFRSGGRFCEARLLLGFVLATSSGLSPVSS 74
           L TKG    +T+ H P+ FSP         S G   E+ L      + S GL P+S+
Sbjct: 203 LETKGKRLSVTVTHFPMIFSPISSRTFVLPSEGTMAESCLSNHHEDSLSPGLPPIST 259


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 268 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 179
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>12_01_0649 - 5497844-5499727
          Length = 627

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = -3

Query: 558 KLFNPVFAG*PSEPPWFVRN---VDLHDDLDLESISKYLQSASMRHFDKAARHEN 403
           K F   F G   EP ++V N    DL   +     ++ + SA  RH + + RH N
Sbjct: 492 KSFFDRFGGEDDEPAYYVMNDMMYDLAKCVSRGECARLVDSADFRHVNSSVRHIN 546


>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 440 DADCRYLLMDSKSRSSWRSTFLTNHGGSDG 529
           D D  Y   DS    S+R+T+ TN+G +DG
Sbjct: 48  DEDNDYYNDDSNFLDSYRTTWATNYGKNDG 77


>05_03_0265 - 11293020-11293329,11293911-11294232,11294332-11294455
          Length = 251

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
 Frame = +2

Query: 479 RSSWRSTFLTNHGGSDG---YPAKTGLNNL--KGF*VYAGRVSEHYTCIGHDGGVCKFCX 643
           RS  +S F T +GG DG        G  NL   G+ +Y   +S   + + +DG +C  C 
Sbjct: 21  RSVAQSAFATFYGGKDGSGTMGGACGYGNLYNAGYGLYNAALS---SALFNDGAMCGACY 77

Query: 644 SVT 652
           ++T
Sbjct: 78  TIT 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,090,351
Number of Sequences: 37544
Number of extensions: 394612
Number of successful extensions: 1010
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)