Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_D03
         (792 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    29   3.2  
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389...    29   3.2  
06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000     28   7.4  
04_03_0965 - 21296608-21297165,21297332-21297682,21297781-212979...    28   7.4  
03_05_0123 + 21029599-21029862,21030269-21030691                       28   9.8  

>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 558 TLPRELPPRPRSWLCTALDRSVTSHAPDSN 647
           TLPR+  P P+S+L   LD  V    PD++
Sbjct: 496 TLPRQPSPAPQSYLVPPLDEHVPPPQPDTS 525


>07_03_0856 -
           22037345-22037665,22037962-22038108,22038201-22038978,
           22039092-22039384,22039663-22039758
          Length = 544

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +1

Query: 550 HLEHCHASFHLXHGPGSAPHWTDPSHPTLLTRTYCIFFCQSRNHFVXIVXP 702
           HL HC  + HL  GPG A H    SH  L  R   +  C+   H + +V P
Sbjct: 277 HLNHCWGANHLFAGPG-ANHLKIASH-DLQLRDIMVNSCEQITH-MELVAP 324


>06_03_1133 - 27886823-27887088,27887837-27888629,27888674-27889000
          Length = 461

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
 Frame = +2

Query: 272 WSEVTSIREVGDEAPERRG-WRAACTRDTRGALPASPSRLDTDVCHNIEMNAETAASGGP 448
           W  V  ++  G    E +  W     R  R  L   P  ++ ++ H    N   +A GG 
Sbjct: 116 WRGVRGVQLHGRTDNEIKNYWNTRLKRRVRAGLTPYPPEIEREIAHLRAQNLNLSAEGGG 175

Query: 449 VAGG 460
             GG
Sbjct: 176 GGGG 179


>04_03_0965 -
           21296608-21297165,21297332-21297682,21297781-21297965,
           21298076-21298172,21298859-21299071,21299206-21299334,
           21299442-21299567,21301280-21301999
          Length = 792

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 423 AFISILWQTSVSSRLGEAGSAPR---VSRVQAARHPRRSGASSPTSLILVTSL 274
           A + ++W  +  +R+GE G  P    VSR ++  H     A +  +L  V+++
Sbjct: 279 AIVKVIWDNNSKNRIGEEGGFPHLIYVSREKSPGHHHHYKAGAMNALTRVSAV 331


>03_05_0123 + 21029599-21029862,21030269-21030691
          Length = 228

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 635 SVGCDGSVQCGAEPGPWXRWKL 570
           +  C G VQ   + G W RW+L
Sbjct: 168 AAACSGCVQFAKQSGAWLRWRL 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,842,474
Number of Sequences: 37544
Number of extensions: 221437
Number of successful extensions: 860
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)