Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_C21
         (786 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   8.7  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   8.7  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -1

Query: 612 QSSDXVXEGVRAGVKPPLSSEAPSAYLTPSSLGMXKGVSPPYFQVNDESQASRLISRHST 433
           ++S    EG    ++   SS +PS + TP  +G    VS    Q +  S +S   +   T
Sbjct: 727 KTSTVTSEGTTLSIESTESSASPSDFTTPDFIGFTSSVSRTSEQYSSSSPSSDTTTMDVT 786

Query: 432 HT 427
            T
Sbjct: 787 ST 788


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
           protein C46C2.1b protein.
          Length = 1677

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 645 TNHPRXNIHFHQSSDXVXEGVRAGVKPP-LSSEAPSAYLTPSSLGMXKGVSP 493
           TNHP  N H  +    +  G   G  PP L S   +A  TP   G    +SP
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMSP 198


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
           protein C46C2.1a protein.
          Length = 1838

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -1

Query: 645 TNHPRXNIHFHQSSDXVXEGVRAGVKPP-LSSEAPSAYLTPSSLGMXKGVSP 493
           TNHP  N H  +    +  G   G  PP L S   +A  TP   G    +SP
Sbjct: 147 TNHPHLNHHVSRIPQAIVTGGTNGSLPPLLISPTSAAAATPLISGKAGPMSP 198


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 564  PLSSEAPSAYLTPSSLGMXKGVSPP 490
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,823
Number of Sequences: 27780
Number of extensions: 264577
Number of successful extensions: 746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)