Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_C18
(776 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.33
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.3
07_03_0846 - 21983581-21986055 29 3.1
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.1
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.4
01_05_0262 - 20137391-20137861,20137937-20138100,20138140-201382... 29 5.4
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374... 28 7.2
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 28 7.2
03_05_0183 - 21681673-21682524 28 7.2
01_06_0695 - 31292622-31293317 28 7.2
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 9.5
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960... 28 9.5
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.33
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +2
Query: 83 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 211
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 351 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 217
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +2
Query: 209 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 358
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 438 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 340
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.4
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 498 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 334
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 333 GKDMLTVEPRESGGSK 286
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>01_05_0262 -
20137391-20137861,20137937-20138100,20138140-20138220,
20138437-20138614,20138786-20139164,20139183-20139358
Length = 482
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +1
Query: 433 MSETAVPLVLSSITIATTSHQ*GKTNLSHDGLTQLTFPFDG*TIQ--RLANFCFAMIGRA 606
M + L S I +A S GK N + Q T+ G + RL F F+++GRA
Sbjct: 25 MGDVDFDLKSSLIIMAQASPFCGKPNEDANAHLQYTYTIKGVNLDAVRLRLFPFSLLGRA 84
Query: 607 DIEGSKSNVAMNAW 648
++ A+N W
Sbjct: 85 KQWFYANHAAVNTW 98
>09_02_0062 -
3742857-3743045,3744641-3744916,3745933-3745992,
3746554-3748102,3748183-3748418
Length = 769
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 590 AKQKFAKRWIVHPSKGNVSWVRPS*DRLVLPY*WLVVAIVILL 462
A+ A+ VHP+ + VR S DRL+ PY L VA +LL
Sbjct: 562 AEAALAQAAAVHPNHPTLKIVRISEDRLLSPYKELSVANKLLL 604
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = -1
Query: 653 GSQAFIATLLFDPSMSALPIIAKQKFAKRWIVHPSKGNVSWVRPS*DRLVLPY 495
G Q + L+F P + L + K + W V SKG V + S D L L Y
Sbjct: 503 GHQGPVHGLMFSPINAILASSSWDKTVRLWDVFESKGAVETFQHSHDVLTLAY 555
>03_05_0183 - 21681673-21682524
Length = 283
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 650 SQAFIATLLFDPSMSALPIIAKQK 579
SQAF A LL D + +A+P++ QK
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQK 252
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +2
Query: 35 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 169
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 9.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +2
Query: 29 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 208
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 209 D 211
+
Sbjct: 791 E 791
>03_05_0951 +
29093962-29094373,29095291-29095388,29095689-29096087,
29096999-29097724,29097802-29097968,29098046-29098311,
29098396-29098581,29099072-29099346,29099435-29099683
Length = 925
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -3
Query: 360 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 187
K+ AS A G D P R GG K+ S + SKR + R + F +L L
Sbjct: 4 KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63
Query: 186 TRASR 172
TRA+R
Sbjct: 64 TRAAR 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,155,507
Number of Sequences: 37544
Number of extensions: 492209
Number of successful extensions: 1398
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1397
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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