Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_C12
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68298-5|CAA92602.1|  290|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    28   9.2  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    28   9.2  

>Z68298-5|CAA92602.1|  290|Caenorhabditis elegans Hypothetical
           protein F44D12.6 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 303 EMRLRSGGGGARRQRCTRHTSAXAXQHAXXHT 398
           E  ++SGGGGA+  R T  T+  A  +A  +T
Sbjct: 250 EETMKSGGGGAKSGRTTPKTAGMATANAPSNT 281


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = +1

Query: 361 RAPXPXSTPXXTPPXPXRAXPAARXPPXPXGSTP 462
           R+P P   P  TPP P R  P  R PP P    P
Sbjct: 153 RSPPPRRPPM-TPPSPQRRPP--RTPPSPEPRNP 183


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 361 RAPXPXSTPXXTPPXPXRAXPAARXPPXPXGST 459
           + P P  +P   PP P    PA+  PP    +T
Sbjct: 18  KQPPPPPSPRRAPPPPPHRKPASLSPPPDDENT 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,740,911
Number of Sequences: 27780
Number of extensions: 122932
Number of successful extensions: 532
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)