Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_C07
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     31   1.3  
03_03_0167 + 15041626-15043029                                         29   5.4  
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    28   7.2  
01_06_0475 + 29610268-29610711                                         28   7.2  

>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 499 CFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPVTTFPILRTEWKAVDVAQNTS 326
           C ++C     G  + ++ S+  TT+   HDT T +S PP+   P++ T    +  + NTS
Sbjct: 162 CRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPLP--PLMDTTLAQLQASMNTS 219

Query: 325 S 323
           S
Sbjct: 220 S 220


>03_03_0167 + 15041626-15043029
          Length = 467

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 556 LQVTTXSDVSIFLPPRKLACFLVCLLAGARSHRTCSVIGTTSIKRHDTRTLSS 398
           +++T    V + LPP      +    A  R H  C ++     K  D RTL++
Sbjct: 1   MELTPLLAVVLLLPPALAVAHMAWTAASRRRHTRCYLLDYVCYKPEDDRTLTA 53


>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -1

Query: 505 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 338
           L+C ++ LLAGA  H    ++  T +KR    H+  T++   P  T  +   +   ++V 
Sbjct: 13  LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72

Query: 337 QNTSSRILL 311
            +    + +
Sbjct: 73  NHAQYNVTI 81


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 273 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 184
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,461,166
Number of Sequences: 37544
Number of extensions: 285902
Number of successful extensions: 749
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)