Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_C06
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    29   0.98 
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   2.3  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    27   3.0  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.9  
SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    25   9.2  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    25   9.2  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   9.2  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 623 NLHPPAEPEHRRIARHERTGRL 558
           NL  PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 609 WRMQVFPVKCVLVRA*QVFAGWLPQCE 689
           WR+ +FP  C       VF  +LPQC+
Sbjct: 80  WRIVLFPKGCNQTEYASVFLEYLPQCK 106


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 478 KQANKKASKFPWGRKIDTSEVVVTCKIRRPVRS 576
           K  N+ + +FP+  KI       TCK  +P RS
Sbjct: 139 KNWNEASRRFPYDYKIFFPNKCSTCKFEKPARS 171


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 680 RKPTREHLSSTHKHALHRKNLHPPAEPEHRRIARHER 570
           R+  +E   S H+H  HR++     EP    ++RH R
Sbjct: 136 RRKEKERTRSNHRHGSHRRH-----EPYRTHLSRHHR 167


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 334 KHVISDPPDPLTVLLGTSSTGH 269
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 105 VANTNPSKSRASQNLPPXSETRPTEKIRRETQWA 206
           +   +P   R + N+P        E+IR+E +WA
Sbjct: 125 IRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 429 IKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 340
           I R DT + + S PPVT    ++  WKA+D+
Sbjct: 47  IIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 623 NLHPPAEPEHRRIARHERTGRLILQVTTTSD 531
           +L PP +    R    E+TG L  Q T+TS+
Sbjct: 77  SLRPPEDDLDSRSIESEQTGTLSKQTTSTSE 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,053,945
Number of Sequences: 5004
Number of extensions: 62478
Number of successful extensions: 216
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)