Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_C06
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     33   0.19 
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815...    30   1.8  
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535...    29   5.4  
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312...    29   5.4  
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    28   7.2  
01_06_0475 + 29610268-29610711                                         28   7.2  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    28   9.5  
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468...    28   9.5  

>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -1

Query: 555 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 385
           + G  D +  +FSS    + C ++C     G  + ++ S+  TT+   HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201

Query: 384 TTFPILRTEWKAVDVAQNTSS 322
              P++ T    +  + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220


>01_06_0381 +
           28878811-28879120,28880189-28880331,28880753-28881532,
           28882568-28883968
          Length = 877

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 665 EHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 561
           EH SS  +H  HR + H   + EHR   RH+R  R
Sbjct: 784 EHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817


>06_03_0310 -
           19453047-19453160,19453240-19453338,19453441-19453513,
           19453598-19453708,19453795-19453956,19454064-19454340,
           19454542-19455160,19455256-19455471
          Length = 556

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 120 PSKSRASQNLPPXSETRPTEKIR 188
           PSKSRASQ  PP + TR T+K +
Sbjct: 207 PSKSRASQ-APPPAHTRATKKAK 228


>02_03_0388 +
           18429538-18430598,18430971-18431081,18431165-18431237,
           18431513-18431695
          Length = 475

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +3

Query: 96  PDDVANTNPSKSRASQNLPPXSETRPTEKIRRET 197
           P       PSKSRA Q  PP + TR T+K + +T
Sbjct: 115 PPQAPRPAPSKSRAPQ-APPPAPTRATKKAKVDT 147


>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -1

Query: 504 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 337
           L+C ++ LLAGA  H    ++  T +KR    H+  T++   P  T  +   +   ++V 
Sbjct: 13  LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72

Query: 336 QNTSSRILL 310
            +    + +
Sbjct: 73  NHAQYNVTI 81


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -2

Query: 272 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 183
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 532 SEVVVTCKIRRPVRS--CLAMRRC 597
           S++ +TCKI RPVRS  C    RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421


>02_01_0624 -
           4681834-4682298,4684250-4684398,4684479-4684557,
           4684827-4684925,4685004-4685081,4685231-4685288,
           4685814-4685913,4686000-4686008,4686105-4686138,
           4686729-4686911,4687099-4687126,4687268-4687380,
           4688253-4688459,4689212-4689511
          Length = 633

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +1

Query: 532 SEVVVTCKIRRPVRS--CLAMRRC 597
           S++ +TCKI RPVRS  C    RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,326,285
Number of Sequences: 37544
Number of extensions: 476477
Number of successful extensions: 1452
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)