Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_C06
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC040339-1|AAH40339.1|  953|Homo sapiens NOD1 protein protein.         31   3.5  
AB126076-1|BAD20203.1|  165|Homo sapiens keratin associated prot...    25   8.7  

>BC040339-1|AAH40339.1|  953|Homo sapiens NOD1 protein protein.
          Length = 953

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = -2

Query: 737 HAXYNFTGSPLLHDVTLTLRKP----TREHLSSTHKHALHRKNLHPPAEPEH 594
           H    F GSP L D T+TL       T  HL+     +L ++N H P E  H
Sbjct: 403 HFRAAFEGSPQLPDCTMTLTDVFLLVTEVHLNRMQPSSLVQRNTHSPVETLH 454


>AB126076-1|BAD20203.1|  165|Homo sapiens keratin associated protein
           protein.
          Length = 165

 Score = 24.6 bits (51), Expect(2) = 8.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 565 PVRSCLAMRRCSGSAGGC 618
           P  SC +   C GS GGC
Sbjct: 50  PACSCSSCGSCGGSKGGC 67



 Score = 24.2 bits (50), Expect(2) = 8.7
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +1

Query: 595 CSGSAGGCRFFR*SACLCVLDKCSRVG 675
           C GS GGC     S C C    C   G
Sbjct: 80  CGGSKGGCGSCGCSQCSCYKPCCCSSG 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,030,710
Number of Sequences: 237096
Number of extensions: 2407550
Number of successful extensions: 6702
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6701
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)