Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B24
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 107 2e-24
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 107 2e-24
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co... 27 3.1
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.1
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 5.4
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 9.4
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 107 bits (257), Expect = 2e-24
Identities = 54/112 (48%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = -2
Query: 748 IQLNGVP-SGQSEWAREHLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRCTQRSYPV 572
IQ+NG + + EWAREH E + + S F Q+EMID I T+R + P
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240
Query: 571 RHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
+ + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 241 KTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 87.8 bits (208), Expect = 2e-18
Identities = 40/61 (65%), Positives = 48/61 (78%)
Frame = -1
Query: 293 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTLADKAAFMGTLKK 114
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQT A+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 113 D 111
D
Sbjct: 386 D 386
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -3
Query: 393 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 107 bits (257), Expect = 2e-24
Identities = 54/112 (48%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = -2
Query: 748 IQLNGVP-SGQSEWAREHLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRCTQRSYPV 572
IQ+NG + + EWAREH E + + S F Q+EMID I T+R + P
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240
Query: 571 RHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGPRNPQK 416
+ + LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG + K
Sbjct: 241 KTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAGDDAK 292
Score = 87.8 bits (208), Expect = 2e-18
Identities = 40/61 (65%), Positives = 48/61 (78%)
Frame = -1
Query: 293 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTLADKAAFMGTLKK 114
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQT A+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 113 D 111
D
Sbjct: 386 D 386
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/38 (63%), Positives = 27/38 (71%)
Frame = -3
Query: 393 NASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
NAST++D +EK ITPMGGF YG V NDFVM G G
Sbjct: 293 NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
complex subunit Cdc45|Schizosaccharomyces pombe|chr
1|||Manual
Length = 638
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 497 SCWSERLSSPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLH 351
S + L S Y + L W++E KR+ KLL M L + C + +H
Sbjct: 322 SLYDSMLHSAYVGSR--LHIWSEEGRKRLHKLLAKMGLSLVECKQTYIH 368
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 132 HGYTQEGSYSRRSCGYHNPS 73
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 638 WCHQGQRIQRCHFSLHTKKLPRK 570
W H ++I+RC F +H +L K
Sbjct: 389 WLHAPEKIKRCSFPIHGVRLITK 411
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -1
Query: 473 SPY*NEQENLSYWTKESTKRMAKLLKTMHLLSMICLRNPLHRWEVSP 333
SP+ + L+Y E + K + + + LRNPL R++VSP
Sbjct: 63 SPFCCFTDTLAYLRCEPYRGYRKCIYRKVKMPNLILRNPLVRYDVSP 109
>SPBC21C3.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 380 SVDALFLITLPSFLWIPW 433
+VDA+F I+ +FLW W
Sbjct: 11 TVDAIFAISSSTFLWSTW 28
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -2
Query: 175 SVMVDSRRWLTRLHSWVHS 119
S + DSR W++R+ +W++S
Sbjct: 2052 SSLGDSRLWISRVATWIYS 2070
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,210,196
Number of Sequences: 5004
Number of extensions: 65712
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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