Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B24
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 113 2e-25
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 113 2e-25
01_01_0084 - 636835-637965 30 2.4
06_03_0915 - 25929433-25930893 29 5.6
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 7.4
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 28 7.4
03_05_0901 + 28635672-28636094,28637623-28637802,28637903-286381... 28 9.8
03_05_0376 - 23598026-23598136,23598395-23598484,23598870-235989... 28 9.8
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 113 bits (271), Expect = 2e-25
Identities = 55/106 (51%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -2
Query: 748 IQLNG-VPSGQSEWAREHLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRCTQRSYPV 572
IQ+NG + + ++ + E IPVD+VF +DEMID I +R P
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 571 RHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 86.2 bits (204), Expect = 3e-17
Identities = 38/52 (73%), Positives = 44/52 (84%)
Frame = -1
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTLADK 141
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 113 bits (271), Expect = 2e-25
Identities = 55/106 (51%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = -2
Query: 748 IQLNG-VPSGQSEWAREHLEXPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRCTQRSYPV 572
IQ+NG + + ++ + E IPVD+VF +DEMID I +R P
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 571 RHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIG 434
+ + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG
Sbjct: 244 KTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG 289
Score = 93.5 bits (222), Expect = 2e-19
Identities = 42/60 (70%), Positives = 48/60 (80%)
Frame = -1
Query: 296 KGCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTLADKAAFMGTLK 117
KGCC+GPKKR++TLR+SL T R ALE+I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 329 KGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 390 ASTEYDLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 280
A TE+D +EK ITPMGGFPHYG V D++M +G G
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334
>01_01_0084 - 636835-637965
Length = 376
Score = 29.9 bits (64), Expect = 2.4
Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 6/128 (4%)
Frame = +2
Query: 287 SNPXIITKSLFTSP*WGKPPIGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFS 466
+NP ++T P + SD S S L T SFL S+T L F
Sbjct: 21 ANPIVLTPGAAPPPPTSSALPTQIPPSDWSLSPADPALATAASFLSTSLSSTSVSLPRFR 80
Query: 467 TVMITFLTSTSYSERHPRRMPS------SNAGNFPKXLXVSYGVASLCATRSDTFVSFAL 628
+++ +FLT+ S S P P+ S + FP L + VAS A+ ++ V AL
Sbjct: 81 SLLASFLTTLSNSLSLPAPSPNLPQAIRSVSPYFPAAL--ASPVASRAASLAEYDVLLAL 138
Query: 629 GDTNAVNH 652
+ + H
Sbjct: 139 AECGLLRH 146
>06_03_0915 - 25929433-25930893
Length = 486
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 334 GETSHRCNGFLRQIILSRCIVFNNFAILFVDSLVQYDRFSCSFQY 468
GE H+ G I+ C++ NN +L V ++ D S S ++
Sbjct: 138 GEVVHKALGRPASIVAQMCVIINNAGVLIVYLIIIGDVMSGSLKH 182
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/44 (25%), Positives = 22/44 (50%)
Frame = +2
Query: 347 IGVMDFSDRSYSVDALFLITLPSFLWIPWSNTIDFLVHFSTVMI 478
+ +DF + ++ +L LPS W W + + + VH ++ I
Sbjct: 392 LSAIDFLKHAADLNTRWLKRLPSNFWATWVHPLTYKVHVKSLWI 435
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 3 FFFFFFALSNVYFHGLHLRL 62
FFFFFF +N+ FH L+ L
Sbjct: 307 FFFFFFFCANILFHHLNYLL 326
>03_05_0901 +
28635672-28636094,28637623-28637802,28637903-28638172,
28638506-28638757,28639205-28639453,28639533-28639606,
28639798-28639915,28640421-28640555,28640813-28640965
Length = 617
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 499 ARAGQKGYHHRTEMNKKIYRIGPRNPQ 419
+RA GY + +E N +IYR+ R+P+
Sbjct: 590 SRADNLGYEYMSEQNNEIYRLLLRDPK 616
>03_05_0376 -
23598026-23598136,23598395-23598484,23598870-23598935,
23599743-23599811,23599890-23599998,23600135-23600232,
23600339-23600420,23601163-23601242,23601346-23601516,
23601671-23601735,23601842-23601986,23602072-23602245,
23602498-23602572,23602831-23602959,23603295-23603432,
23603509-23603610,23604008-23604112,23604282-23604399,
23605752-23605909,23606159-23606261,23606515-23606582,
23606940-23607016,23608635-23608806
Length = 834
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 239 VHTKRAALEKINLKFIDTSSKFGHGRFQTLAD 144
V KRA LEK+ F+ +S+F F +L D
Sbjct: 348 VREKRAELEKLKTTFVRRASEFLRNYFSSLVD 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,380,212
Number of Sequences: 37544
Number of extensions: 442649
Number of successful extensions: 1111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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