Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B22
(793 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 105 7e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 87 3e-18
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 82 1e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 77 3e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 4e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 73 6e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 71 2e-13
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 68 1e-12
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 66 5e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 66 7e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 5e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 62 7e-11
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 62 9e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 4e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 54 2e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 54 3e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 7e-08
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 52 9e-08
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 48 1e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 48 2e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 45 1e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 44 3e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 42 1e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.020
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 34 0.020
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.062
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.082
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 32 0.11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.25
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.25
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.76
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 1.0
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 1.0
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.3
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.3
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 28 1.3
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 28 1.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 7.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.4
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 9.4
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 9.4
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 105 bits (252), Expect = 7e-24
Identities = 47/117 (40%), Positives = 78/117 (66%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++F ++K AH++ V+ G+L + A E+HG+L+Q QR+ +L+ FR+ + + L+ATDVA+RG
Sbjct: 508 IIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRG 567
Query: 470 LDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRAS 300
+DI G+ VIN+ PAT E Y+H ++LAGEG+R ++K + K +S
Sbjct: 568 IDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGDRKVLKGVFKNSS 624
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = -1
Query: 247 EKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTP 68
+++ +LEP + +LDEE E+++ E+ K E ++K G + + R WFQ+
Sbjct: 645 KEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY-----GDEIRSRPARTWFQSE 699
Query: 67 KQKREEKERLALTTHVEKKKKK 2
K K+ K A K+KK
Sbjct: 700 KDKQASKASEAKDKKSLAKRKK 721
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 87.0 bits (206), Expect = 3e-18
Identities = 46/115 (40%), Positives = 67/115 (58%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++FV R A ++ +L +L ++ ELH + Q +R++SL RFR + A +LVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 470 LDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKR 306
LDIP V VINF LP + YIH +S+ E + +LV +I R
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERDVDLVHAIEDR 376
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/83 (46%), Positives = 52/83 (62%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++F +T RL ++L LG A LHG L+Q RL +L +F+ LVATDVAARG
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
LDIP V+ VIN+ +P + YIH
Sbjct: 349 LDIPLVDVVINYDIPTDSKAYIH 371
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 77.0 bits (181), Expect = 3e-15
Identities = 33/83 (39%), Positives = 53/83 (63%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++FV KR + L +G A LHG+ +Q QR ++++ R + AD+LVATD+A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
+DIP V+ V+N+ + ++E Y H
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTH 602
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.3 bits (172), Expect = 4e-14
Identities = 38/83 (45%), Positives = 51/83 (61%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++FV K++A R+ L +HG ++Q RL +L F+ + VLVATDVAARG
Sbjct: 421 LIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARG 479
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
LDIP V VIN T P T+E Y+H
Sbjct: 480 LDIPKVQLVINVTFPLTIEDYVH 502
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 72.5 bits (170), Expect = 6e-14
Identities = 40/122 (32%), Positives = 62/122 (50%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
+VF R+ L L V + LH L+Q +RL SL++F+ VLV TDVAARG
Sbjct: 393 MVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARG 452
Query: 470 LDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPV 291
+DIP V VI++ +P T + Y+H + + G E + +K + R K +
Sbjct: 453 IDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDGVSILMCGPKELSQLKRLCYRLKKKI 512
Query: 290 KS 285
++
Sbjct: 513 ET 514
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 70.9 bits (166), Expect = 2e-13
Identities = 35/83 (42%), Positives = 50/83 (60%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++FV+TKR A L L A +HG Q +R +L+ FR + ++VAT VA+RG
Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
LDIP V VIN+ LP ++ Y+H
Sbjct: 494 LDIPNVTHVINYDLPTDIDDYVH 516
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 68.1 bits (159), Expect = 1e-12
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
V+FVQ +A L+ L + +HG L Q +R ++L +FR+ + VL+ATD+ ARG
Sbjct: 292 VIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARG 351
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
+D GV VINF P ++ YIH
Sbjct: 352 IDFHGVKMVINFDFPQSVHSYIH 374
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 66.1 bits (154), Expect = 5e-12
Identities = 32/88 (36%), Positives = 50/88 (56%)
Frame = -3
Query: 665 SATGPVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATD 486
+ T V+F T+R+ L L + +HG ++Q QR + FR + +L+ TD
Sbjct: 257 TVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTD 316
Query: 485 VAARGLDIPGVNTVINFTLPATLEHYIH 402
+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 317 LLARGIDVQQVSLVINYDLPANRENYIH 344
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.7 bits (153), Expect = 7e-12
Identities = 31/88 (35%), Positives = 52/88 (59%)
Frame = -3
Query: 665 SATGPVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATD 486
S +VFV TK + +L G ++++G+L+Q RL+ + FR + ++LV TD
Sbjct: 345 SPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTD 404
Query: 485 VAARGLDIPGVNTVINFTLPATLEHYIH 402
VA+RG+DIP + VIN+ P + ++H
Sbjct: 405 VASRGIDIPLLANVINYDFPPQPKVFVH 432
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.9 bits (146), Expect = 5e-11
Identities = 31/83 (37%), Positives = 46/83 (55%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++F TKR A + L G A +HG Q +R L FR ++ ++VATDVA+RG
Sbjct: 373 LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRG 432
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
+D+ G+ V N+ P E Y+H
Sbjct: 433 IDVKGITHVFNYDFPGNTEDYVH 455
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 62.5 bits (145), Expect = 7e-11
Identities = 30/86 (34%), Positives = 49/86 (56%)
Frame = -3
Query: 659 TGPVVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVA 480
T V+F ++R+ L + +HG + Q +R ++ FR+ + VL+ TD+
Sbjct: 261 TQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIW 320
Query: 479 ARGLDIPGVNTVINFTLPATLEHYIH 402
ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIH 346
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 62.1 bits (144), Expect = 9e-11
Identities = 30/83 (36%), Positives = 49/83 (59%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
V+FV++ +A+ L +L + +HG L Q +R+ K F++ + VATDV RG
Sbjct: 299 VIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRG 358
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
+DI VN VIN+ +P + + Y+H
Sbjct: 359 IDIERVNIVINYDMPDSPDSYLH 381
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 56.4 bits (130), Expect = 4e-09
Identities = 28/83 (33%), Positives = 44/83 (53%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
+VFV + A L L G + +HG +Q R ++ ++ DVL+AT V ARG
Sbjct: 672 LVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARG 731
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
LD+ + V+N+ P +E Y+H
Sbjct: 732 LDVKSLQLVVNYDCPNHMEDYVH 754
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -3
Query: 572 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
LH L QR + FR+ Q+ +L ATDV ARG+D P + V+ T P+ + YIH
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 53.6 bits (123), Expect = 3e-08
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
+VF+ + + +L + + +LHG Q +R ++ F + +L+ T+VAARG
Sbjct: 340 IVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARG 399
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
LDIP V+ ++ + P YIH
Sbjct: 400 LDIPAVDWIVQYDPPDDPRDYIH 422
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = -3
Query: 572 LHGALNQPQRLDSLKRFREQQ---ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 402
LHG+L+Q R +L F + + +L+ TDVAARGLD+P V+ V+ + P + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 52.0 bits (119), Expect = 9e-08
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGML--GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAA 477
+VF+ + +Q ++ + G+ LHG Q R + +F + VL TD+ A
Sbjct: 287 IVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVA 346
Query: 476 RGLDIPGVNTVINFTLPATLEHYIH 402
RGLD P V+ VI P ++ YIH
Sbjct: 347 RGLDFPAVDWVIQLDAPEDVDTYIH 371
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 236 QTRTGDCRNSRRGIRREADEQDGEANRQI 150
+ RTG R +R R+E +E+ E N QI
Sbjct: 3 KNRTGRSREAREKKRKEEEEEIEELNSQI 31
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 48.4 bits (110), Expect = 1e-06
Identities = 26/83 (31%), Positives = 36/83 (43%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++F + + L + LG H + Q R FR LV +D+ RG
Sbjct: 285 IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRG 344
Query: 470 LDIPGVNTVINFTLPATLEHYIH 402
+DI VN VINF P E Y+H
Sbjct: 345 IDIQAVNVVINFDFPKNAETYLH 367
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 48.0 bits (109), Expect = 2e-06
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Frame = -3
Query: 659 TGPVVFVQTKRQAHRLHVMLGML------GVKAAELHGALNQPQRLDSLKRFREQQADVL 498
T + FV++ A RLH +L ++ +L++ +R + RF ++L
Sbjct: 432 TNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLL 491
Query: 497 VATDVAARGLDIPGVNTVINFTLPATLEHYIHXXXXXXXXXXXXXXVSLAGEGERNLVKS 318
V +D+ ARG+D+ VIN+ P ++ Y+H +L E +
Sbjct: 492 VCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAGREGFAWTLVQSHEGHHFSK 551
Query: 317 IVK--RASKPVKSRQI 276
+VK R + P+K +I
Sbjct: 552 LVKQLRRTLPIKRIKI 567
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 45.2 bits (102), Expect = 1e-05
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++F + K A + + G A L G L QR + FR + VLV T+V ARG
Sbjct: 356 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 415
Query: 470 LDIPGVNTVINFTLP 426
+D+ VN V+N+ +P
Sbjct: 416 IDVSQVNLVVNYDMP 430
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 44.0 bits (99), Expect = 3e-05
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 12/94 (12%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLG---VKAAEL--HGALNQPQ-------RLDSLKRFREQQA 507
V+FV+ K A L + + L ++A HG +Q + + D+L +F+ +
Sbjct: 365 VIFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKY 424
Query: 506 DVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 405
+VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 425 NVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Frame = -3
Query: 572 LHGALNQPQRLDSLKRFREQ-QADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIHXX 396
LHG Q R + ++F++ + VL TD+A+RGLDIP V+ V+ P + + H
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRC 347
Query: 395 XXXXXXXXXXXXVSLAGEGERNLVKSIVKRASKPVKSRQIP 273
+ L +G + +++ P+ P
Sbjct: 348 GRAGRAGRAGVAIVLLNDGREEEYEELLRVRKVPITRIDTP 388
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -3
Query: 593 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 441
LG+ A L G N +R ++ FR+++ VLV V G DIP ++ ++
Sbjct: 288 LGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -3
Query: 593 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 420
+G A ++Q + +++K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.7 bits (71), Expect = 0.062
Identities = 17/72 (23%), Positives = 37/72 (51%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 471
++FV + +RL + L G+K+ L+ L RL L+++ + +++ATD +
Sbjct: 264 LIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMM 323
Query: 470 LDIPGVNTVINF 435
+I + ++F
Sbjct: 324 GEIEELENNVDF 335
Score = 32.3 bits (70), Expect = 0.082
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -3
Query: 479 ARGLDIPGVNTVINFTLPATLEHYIH 402
ARGLD V V+NF +P+ + YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.3 bits (70), Expect = 0.082
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -3
Query: 590 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 411
G+KA H L + +R ++ ++VAT G+D V VI+ + P +LE
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 410 Y 408
Y
Sbjct: 827 Y 827
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 560 LNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 441
+NQ Q+ +++ +FR + LVAT + GLDI + +I
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMII 554
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VLVA 492
++F +TK+ +H L + A H G ++ +R + FR +++A
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 491 TDVAARGLDIPGVNTVINFTLPATLEHYI 405
T G++ GV V+++ LPA+ Y+
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 7/89 (7%)
Frame = -3
Query: 650 VVFVQTKRQAHRLHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VLVA 492
++F +TK+ +H L + A H G ++ +R + FR +++A
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 491 TDVAARGLDIPGVNTVINFTLPATLEHYI 405
T G++ GV V+++ LPA+ Y+
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.76
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -1
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEK 47
E+ +EK + K+E + K + L ++E + + +R+ W Q+PK + K
Sbjct: 999 EDLSEKDLKKIEAKATKKKK-LTRNEIKAKERRARERELAWLQSPKGTEKPK 1049
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -1
Query: 190 EKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEK 14
E ++N +E + V +KDE + + E +R+++ + K+K+E+KE+ EK
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK------KEK 469
Query: 13 KKK 5
KKK
Sbjct: 470 KKK 472
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -1
Query: 244 KLIKLEPEIVAILDEEYAEKQMNKMEKQTA 155
K+I EPE+ AI D E ++KQ+ + E + A
Sbjct: 116 KMINEEPELKAIEDTEESKKQLQREESKEA 145
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -1
Query: 274 RPISSPNNREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQ 95
R + +EK + ++ +EE ++ ++ +Q A+ + K+ E + E +
Sbjct: 586 RELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQR 645
Query: 94 RQRD----WFQTPKQKREEKERLALTTHVEKKKKK 2
+R+ + +QKREEK++ EKK KK
Sbjct: 646 LKREQEKKQQELERQKREEKQK---QKEREKKLKK 677
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 202 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 83
E ++ K E+ AK + L +DE +P P H RD
Sbjct: 404 ERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 178 NKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEKKKKK 2
+K++ + E LKK+E + + E + Q Q K+K +EKER+ E+ KK
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSKK 323
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/83 (20%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -1
Query: 283 DKYRPISSPNNREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKD--EAQPGP 110
+K R I+ NR++ ++ E E+ +EE +Q + ++ A ++ A+
Sbjct: 35 EKAREITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQTSERPPLSAEEAK 94
Query: 109 QHEPQRQRDWFQTPKQKREEKER 41
+ +++D ++ K +R+ K R
Sbjct: 95 RIREVKEKDRLESKKNERQGKPR 117
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 3.1
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -1
Query: 265 SSPNNREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQR 86
S+ NN L+ E + A+ D++ EK+ + ++ ++ D + Q P+ +
Sbjct: 4023 SAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENE- 4081
Query: 85 DWFQTPKQ-KREEKE 44
D P+ K +EKE
Sbjct: 4082 DHLDLPEDLKLDEKE 4096
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.1
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -1
Query: 205 DEEYAEKQMNKMEKQ---TAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLA 35
++E Q NK++ +A +E V +K+ + + E + +QKREEK RLA
Sbjct: 608 EQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEER-------IAQQKREEKRRLA 660
Query: 34 LTTHVEKKKKK 2
+++ KK
Sbjct: 661 YEESLKRHAKK 671
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 193 AEKQMNKMEKQTAKLEVVLK-KDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVE 17
AE++ + ++ AK E K K EA+ + E + + KRE +E++ T
Sbjct: 637 AEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEEN 696
Query: 16 KKKK 5
K+K
Sbjct: 697 AKRK 700
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -1
Query: 244 KLIKLEPEIVAI-LDEEYAEK-QMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQT 71
+L KLE V + ++E ++ ++NK + + K +++ + AQ +HE + +
Sbjct: 301 ELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEA 360
Query: 70 PKQKREE-KERLALTTHVEKKK 8
KQ+ + +E + T KK
Sbjct: 361 AKQRMDNIREEYKVITQERNKK 382
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/75 (24%), Positives = 28/75 (37%)
Frame = -1
Query: 229 EPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREE 50
E ++V I ++Y+ NK ++ + H P W KR
Sbjct: 162 EEDLVRISSDKYSSALQNKYHLIKILTSLIEESKRNAEKFSHVPLNTGHWKYKKCDKRMP 221
Query: 49 KERLALTTHVEKKKK 5
+E LA T + KKK
Sbjct: 222 QEWLADATTLTSKKK 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,745
Number of Sequences: 5004
Number of extensions: 36404
Number of successful extensions: 168
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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