Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B19
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 138 1e-33
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 135 8e-33
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 37 0.003
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 29 0.74
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 4.0
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 26 5.2
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 6.9
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 138 bits (333), Expect = 1e-33
Identities = 65/103 (63%), Positives = 78/103 (75%)
Frame = -1
Query: 630 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAISCNTKSSHSIGLMW 451
+RE RL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAI N K SIGL+W
Sbjct: 118 YREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIW 177
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 322
+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 178 YLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/46 (54%), Positives = 29/46 (63%)
Frame = -3
Query: 766 PXXXFVIXSRPFGQRAVXKFXAHTXXTXIAGRFTPGAFTNQIQAAF 629
P V+ +R +G RAV KF AHT T IAGRFTPG FTN I +
Sbjct: 73 PADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 118
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 135 bits (326), Expect = 8e-33
Identities = 64/101 (63%), Positives = 77/101 (76%)
Frame = -1
Query: 630 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAISCNTKSSHSIGLMW 451
+RE RL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AI N K SIGL W
Sbjct: 119 YREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAW 178
Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 179 YLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 59.3 bits (137), Expect = 6e-10
Identities = 28/46 (60%), Positives = 30/46 (65%)
Frame = -3
Query: 766 PXXXFVIXSRPFGQRAVXKFXAHTXXTXIAGRFTPGAFTNQIQAAF 629
P VI SRP+G RAV KF AHT T IAGRFTPG FTN I +
Sbjct: 74 PADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTY 119
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/74 (28%), Positives = 36/74 (48%)
Frame = -1
Query: 657 LLLTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAISCNTK 478
L+ T K + L+++L+P ++ EA ++P I + +TD+ R V I N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 477 SSHSIGLMWWLLAR 436
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAISCNTKSSHSI 463
T A + + LC+ +S RF D+A++ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +2
Query: 371 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 469
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 4.0
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = -1
Query: 543 IALCNTDSPLRFVDIAISCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWD 388
IAL N S ++ AIS + IGL W L REV R + + R++ WD
Sbjct: 344 IALINPTSQVK-ASKAIS----TVQEIGLKWTLKLREVERKQLLTAREKWWD 390
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 26.2 bits (55), Expect = 5.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = -1
Query: 675 DVSHQVLLLTRSKLHFREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVD 502
+ + ++ L HF +LL+VL H T Y I I NT+ LRF D
Sbjct: 249 ETAQKIFLSLCFSQHFPSEKLLMVL---LLHGTETMQEYAMIQAINFVNTEQKLRFYD 303
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -2
Query: 410 FPVTSAGML--WLICSSTVTLKKVKRM 336
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,788
Number of Sequences: 5004
Number of extensions: 49743
Number of successful extensions: 139
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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