Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B19
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   136   2e-32
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   133   2e-31
06_03_0543 + 21967787-21970261                                         29   5.4  
04_04_0907 + 29304830-29305030,29305296-29305547                       28   9.5  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    28   9.5  

>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  136 bits (328), Expect = 2e-32
 Identities = 60/105 (57%), Positives = 79/105 (75%)
 Frame = -1

Query: 630 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAISCNTKSSHSIGLMW 451
           F E RLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI I  N K  +SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLF 179

Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAKEQ 316
           WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++A  Q
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEEAPAQ 224



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = -3

Query: 766 PXXXFVIXSRPFGQRAVXKFXAHTXXTXIAGRFTPGAFTNQIQAAF 629
           P    V  +RP+GQRAV KF  +T    IAGR TPG FTNQ+Q +F
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120


>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  133 bits (321), Expect = 2e-31
 Identities = 58/101 (57%), Positives = 76/101 (75%)
 Frame = -1

Query: 630 FREXRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAISCNTKSSHSIGLMW 451
           F E RLLI+ DP  DHQPI E++  NIP IA C+TDSP+R+VDI I  N K   SIG ++
Sbjct: 120 FSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLF 179

Query: 450 WLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 328
           WLLAR VL++RG +    +WDV+VDLFFYRDPEE+++ E++
Sbjct: 180 WLLARMVLQMRGTILPGHKWDVMVDLFFYRDPEEAKEQEEE 220



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 25/46 (54%), Positives = 30/46 (65%)
 Frame = -3

Query: 766 PXXXFVIXSRPFGQRAVXKFXAHTXXTXIAGRFTPGAFTNQIQAAF 629
           P    V  +RP+GQRAV KF  +T    IAGR TPG FTNQ+Q +F
Sbjct: 75  PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>04_04_0907 + 29304830-29305030,29305296-29305547
          Length = 150

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 597 PAQDHQPITE-ASYVNIPVIALCNTDSPLRFVDIAISCNT 481
           P  D   + E A+  NIP+I L + D P    +IA +C T
Sbjct: 23  PESDRPRLAEVATDSNIPLIDLASPDKPRVIAEIAQACRT 62


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +1

Query: 358 VTVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 474
           V  + Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 462 VNNKPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,380,936
Number of Sequences: 37544
Number of extensions: 346316
Number of successful extensions: 873
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)