Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B12
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.43
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.75
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 0.99
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 27 3.0
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 27 3.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 5.3
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 5.3
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 26 5.3
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 7.0
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.43
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = +3
Query: 387 PATTQTTILRVPPLLHDVTPTLRNP---TANTCQARTSTHFTGKTCIRLRNPNTAASPDT 557
P +T +T + +PP T T NP T+ +C TS TG + L P T P T
Sbjct: 140 PTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSS-SLSTPITPTVPPT 198
Query: 558 N 560
+
Sbjct: 199 S 199
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.1 bits (62), Expect = 0.75
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 387 PATTQTTILRVPPLLHDVTPTLRNPTANTCQARTSTHFTGKTCIRLRNPNTAASP-DTNA 563
P T+ T + PP+ P ++ TST T T + P T+++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 564 P 566
P
Sbjct: 1703 P 1703
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 509 NLHPPAEPEHRRIARHERTGRL 574
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Frame = +2
Query: 305 AEVSPPATCADSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE-EPNREHLSS 481
A S T DS+ I +T+ + H + S R SH EP R HLS
Sbjct: 105 ANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHLSR 164
Query: 482 THKHALHRKNLHPPAEPEHRRIARH 556
H+H+ N H + + R H
Sbjct: 165 HHRHS--TTNYHSKRDDRYERRREH 187
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 371 TATNLTSHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNLHPPAEPEHRRIA 550
T T S ++ + S S + H + +E S H+H HR++ EP ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163
Query: 551 RHER 562
RH R
Sbjct: 164 RHHR 167
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 3.0
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 6/189 (3%)
Frame = +2
Query: 176 SAGAPISAVRAGGVISSFGGPVGRPPLPSRRSARFSRTGWAATAEVSPPATCADSQDILP 355
S+ + IS+ + SSF S+ S+ FS T ++++ S T + S P
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSS----SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRP 393
Query: 356 LCKLLTATNLTSHHANYNFTGSTS-LTRCYSHTEEPNR--EHLSSTHKHALHRKNLHPPA 526
+++L+SH ++ + S++ ++ + H +R H SS +L K + +
Sbjct: 394 ASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHSLSSLSSKPILTAS 453
Query: 527 EPEHRRIARH--ERTGRLILQV-TTTSXCVNFSSPRKLACFLVCLLAGARSHRTCSVIGI 697
+ H ER+ ++ V T +S ++S L+ ++ + S +
Sbjct: 454 SSSLLTSSSHTYERSTVYVVTVETVSSGSSTYASQSTQTSILLVIVGDSSSTDSSGASST 513
Query: 698 ESSRS*NFS 724
S S FS
Sbjct: 514 HSKTSIFFS 522
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 235 TRRPASVTVEAICPVLADWVGRNRGSLTSGYLCR 336
TR+ + + ++A+CPVL + VG LT L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = +2
Query: 335 DSQDILPLCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEPNREHLSSTHKHALHRKNL 514
D LC L + LT ANYN S S++R + E+P+ H H + +
Sbjct: 75 DGHSPTSLCVLENGSVLT---ANYN---SASISRSKAKDEKPHVWHHEGKSLHPERQTSS 128
Query: 515 HPPAEPEHRRI 547
HP H+ +
Sbjct: 129 HPHQVTAHKHL 139
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 360 HSGKMSCESAQVAGGETSAVAAHPVRENRADRLDGNGGRPTGPPNDEITPPARTADI 190
+SGK S +S G + P N ++ GNG PT P I PP ++I
Sbjct: 368 YSGKSSMKSDDNVGSSANTAPNSPTSANSSEGNQGNG--PTTYP---IKPPTNISEI 419
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 288 LGGPQPRKSHLRLPVQTHKTFYHYANF 368
+GG Q K +L LP QT FY F
Sbjct: 3065 MGGNQVAKGYLNLPEQTDAKFYFDRRF 3091
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 290 QSARTGQIASTVTEAGRRVRQTTRSRLQHE 201
+S + G + S + +RVR+T R++HE
Sbjct: 64 RSTKAGSVHSVPMKRTKRVRRTPAQRIEHE 93
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +2
Query: 326 TCADSQDILPLCKLLTATNLTSHHANYNFTG 418
+C + + +C LL+ ++ SH Y++TG
Sbjct: 498 SCVTTDEAFNVCDLLSISDCLSHDFPYSYTG 528
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 355 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GTQPRTLVKHAQART 498
TM + ++K RKL+ HL + L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,112
Number of Sequences: 5004
Number of extensions: 66126
Number of successful extensions: 227
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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