Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B10
         (850 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504...    25   9.1  

>07_01_0674 +
           5047503-5047646,5047808-5047901,5048743-5048828,
           5049380-5049429,5049517-5049586,5049668-5049749,
           5049867-5050267,5050414-5050941,5051823-5052044
          Length = 558

 Score = 24.6 bits (51), Expect(2) = 9.1
 Identities = 11/35 (31%), Positives = 12/35 (34%)
 Frame = +1

Query: 376 PXXPXPXXXXXXXFXVPGXXXXXXPTXPXPXXPPP 480
           P  P P         +PG       T P P  PPP
Sbjct: 177 PRIPLPSSSAGASSSMPGTEEAGPSTLPPPPPPPP 211



 Score = 21.8 bits (44), Expect(2) = 9.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 457 PXPXXPPPXSPP 492
           P P  PPP  PP
Sbjct: 251 PPPPPPPPGPPP 262


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,658
Number of Sequences: 37544
Number of extensions: 125128
Number of successful extensions: 910
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)