Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B09
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 89 7e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 83 4e-17
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 80 3e-16
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 75 9e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 73 4e-14
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 71 2e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 68 1e-12
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 66 7e-12
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 65 1e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 64 3e-11
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 63 5e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 60 4e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 60 5e-10
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 56 8e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 54 2e-08
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 52 7e-08
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 51 2e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 51 2e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 48 2e-06
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 47 4e-06
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 44 3e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 43 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 41 2e-04
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 34 0.020
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 34 0.020
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 33 0.062
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 32 0.082
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 32 0.11
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 29 0.77
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.77
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 29 0.77
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 29 1.0
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 29 1.0
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 28 1.3
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy... 28 1.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 1.8
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 3.1
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 26 7.1
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 25 9.4
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 9.4
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 25 9.4
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 9.4
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 9.4
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 89.0 bits (211), Expect = 7e-19
Identities = 38/83 (45%), Positives = 61/83 (73%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ F ++K AH++ V+ G+L + A E+HG+L+Q QR+ +L+ FR+ + + L+ATDVA+RG
Sbjct: 508 IIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRG 567
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
+DI G+ VIN+ PAT E Y+H
Sbjct: 568 IDIKGIEVVINYEAPATHEVYLH 590
Score = 39.1 bits (87), Expect = 7e-04
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = -3
Query: 248 EKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTP 69
+++ +LEP + +LDEE E+++ E+ K E ++K G + + R WFQ+
Sbjct: 645 KEIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKY-----GDEIRSRPARTWFQSE 699
Query: 68 KQKREEKERLALTTHVEKKKKK 3
K K+ K A K+KK
Sbjct: 700 KDKQASKASEAKDKKSLAKRKK 721
Score = 29.5 bits (63), Expect = 0.58
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = -2
Query: 402 GWVAQPGRVAPGVSVSLAGEGERNLVKSIVKRAS 301
G A+ GR G +++LAGEG+R ++K + K +S
Sbjct: 593 GRTARAGR--SGRAITLAGEGDRKVLKGVFKNSS 624
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 83.0 bits (196), Expect = 4e-17
Identities = 40/83 (48%), Positives = 55/83 (66%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ FV R A ++ +L +L ++ ELH + Q +R++SL RFR + A +LVATDVA+RG
Sbjct: 262 IIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRG 321
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
LDIP V VINF LP + YIH
Sbjct: 322 LDIPSVQLVINFDLPRDPDDYIH 344
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 80.2 bits (189), Expect = 3e-16
Identities = 39/83 (46%), Positives = 51/83 (61%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ F +T RL ++L LG A LHG L+Q RL +L +F+ LVATDVAARG
Sbjct: 289 IIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARG 348
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
LDIP V+ VIN+ +P + YIH
Sbjct: 349 LDIPLVDVVINYDIPTDSKAYIH 371
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 75.4 bits (177), Expect = 9e-15
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ FV KR + L +G A LHG+ +Q QR ++++ R + AD+LVATD+A RG
Sbjct: 520 IIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATDIAGRG 579
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
+DIP V+ V+N+ + ++E Y H
Sbjct: 580 IDIPNVSLVLNYNMAKSIEDYTH 602
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.3 bits (172), Expect = 4e-14
Identities = 39/83 (46%), Positives = 50/83 (60%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
L FV K++A R+ L +HG ++Q RL +L F+ + VLVATDVAARG
Sbjct: 421 LIFVLYKKEAARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARG 479
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
LDIP V VIN T P T+E Y+H
Sbjct: 480 LDIPKVQLVINVTFPLTIEDYVH 502
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/83 (43%), Positives = 49/83 (59%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
L FV+TKR A L L A +HG Q +R +L+ FR + ++VAT VA+RG
Sbjct: 434 LIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRG 493
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
LDIP V VIN+ LP ++ Y+H
Sbjct: 494 LDIPNVTHVINYDLPTDIDDYVH 516
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 68.1 bits (159), Expect = 1e-12
Identities = 33/72 (45%), Positives = 46/72 (63%)
Frame = -1
Query: 619 RLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVIN 440
R+ L L V + LH L+Q +RL SL++F+ VLV TDVAARG+DIP V VI+
Sbjct: 404 RITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIH 463
Query: 439 FTLPATLEHYIH 404
+ +P T + Y+H
Sbjct: 464 YHVPHTADMYVH 475
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 65.7 bits (153), Expect = 7e-12
Identities = 33/83 (39%), Positives = 49/83 (59%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ FVQ +A L+ L + +HG L Q +R ++L +FR+ + VL+ATD+ ARG
Sbjct: 292 VIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARG 351
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
+D GV VINF P ++ YIH
Sbjct: 352 IDFHGVKMVINFDFPQSVHSYIH 374
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/88 (35%), Positives = 51/88 (57%)
Frame = -1
Query: 667 SATGPLFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATD 488
S L FV TK + +L G ++++G+L+Q RL+ + FR + ++LV TD
Sbjct: 345 SPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTD 404
Query: 487 VAARGLDIPGVNTVINFTLPATLEHYIH 404
VA+RG+DIP + VIN+ P + ++H
Sbjct: 405 VASRGIDIPLLANVINYDFPPQPKVFVH 432
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 63.7 bits (148), Expect = 3e-11
Identities = 31/88 (35%), Positives = 49/88 (55%)
Frame = -1
Query: 667 SATGPLFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATD 488
+ T + F T+R+ L L + +HG ++Q QR + FR + +L+ TD
Sbjct: 257 TVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTD 316
Query: 487 VAARGLDIPGVNTVINFTLPATLEHYIH 404
+ ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 317 LLARGIDVQQVSLVINYDLPANRENYIH 344
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 62.9 bits (146), Expect = 5e-11
Identities = 32/83 (38%), Positives = 45/83 (54%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
L F TKR A + L G A +HG Q +R L FR ++ ++VATDVA+RG
Sbjct: 373 LIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRG 432
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
+D+ G+ V N+ P E Y+H
Sbjct: 433 IDVKGITHVFNYDFPGNTEDYVH 455
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.1 bits (139), Expect = 4e-10
Identities = 29/86 (33%), Positives = 48/86 (55%)
Frame = -1
Query: 661 TGPLFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVA 482
T + F ++R+ L + +HG + Q +R ++ FR+ + VL+ TD+
Sbjct: 261 TQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIW 320
Query: 481 ARGLDIPGVNTVINFTLPATLEHYIH 404
ARG+D+ V+ VIN+ LPA E+YIH
Sbjct: 321 ARGIDVQQVSLVINYDLPANRENYIH 346
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 59.7 bits (138), Expect = 5e-10
Identities = 29/83 (34%), Positives = 48/83 (57%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ FV++ +A+ L +L + +HG L Q +R+ K F++ + VATDV RG
Sbjct: 299 VIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRG 358
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
+DI VN VIN+ +P + + Y+H
Sbjct: 359 IDIERVNIVINYDMPDSPDSYLH 381
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 55.6 bits (128), Expect = 8e-09
Identities = 28/83 (33%), Positives = 43/83 (51%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
L FV + A L L G + +HG +Q R ++ ++ DVL+AT V ARG
Sbjct: 672 LVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARG 731
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
LD+ + V+N+ P +E Y+H
Sbjct: 732 LDVKSLQLVVNYDCPNHMEDYVH 754
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.4 bits (125), Expect = 2e-08
Identities = 24/57 (42%), Positives = 33/57 (57%)
Frame = -1
Query: 574 LHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 404
LH L QR + FR+ Q+ +L ATDV ARG+D P + V+ T P+ + YIH
Sbjct: 323 LHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Frame = -1
Query: 574 LHGALNQPQRLDSLKRFREQQ---ADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 404
LHG+L+Q R +L F + + +L+ TDVAARGLD+P V+ V+ + P + + Y+H
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 51.2 bits (117), Expect = 2e-07
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = -1
Query: 607 MLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLP 428
+L + + +LHG Q +R ++ F + +L+ T+VAARGLDIP V+ ++ + P
Sbjct: 355 LLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPP 414
Query: 427 ATLEHYIH 404
YIH
Sbjct: 415 DDPRDYIH 422
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 51.2 bits (117), Expect = 2e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = -1
Query: 592 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 413
G+ LHG Q R + +F + VL TD+ ARGLD P V+ VI P ++
Sbjct: 309 GISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDT 368
Query: 412 YIH 404
YIH
Sbjct: 369 YIH 371
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -2
Query: 237 QTRTGDCRNSRRGIRREADEQDGEANRQI 151
+ RTG R +R R+E +E+ E N QI
Sbjct: 3 KNRTGRSREAREKKRKEEEEEIEELNSQI 31
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Frame = -1
Query: 661 TGPLFFVQTKRQAHRLHVMLGML------GVKAAELHGALNQPQRLDSLKRFREQQADVL 500
T L FV++ A RLH +L ++ +L++ +R + RF ++L
Sbjct: 432 TNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLSRDERKKIISRFATGDLNLL 491
Query: 499 VATDVAARGLDIPGVNTVINFTLPATLEHYIH 404
V +D+ ARG+D+ VIN+ P ++ Y+H
Sbjct: 492 VCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 46.8 bits (106), Expect = 4e-06
Identities = 26/83 (31%), Positives = 35/83 (42%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ F + + L + LG H + Q R FR LV +D+ RG
Sbjct: 285 IIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRG 344
Query: 472 LDIPGVNTVINFTLPATLEHYIH 404
+DI VN VINF P E Y+H
Sbjct: 345 IDIQAVNVVINFDFPKNAETYLH 367
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/75 (34%), Positives = 38/75 (50%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
+ F + K A + + G A L G L QR + FR + VLV T+V ARG
Sbjct: 356 IIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 415
Query: 472 LDIPGVNTVINFTLP 428
+D+ VN V+N+ +P
Sbjct: 416 IDVSQVNLVVNYDMP 430
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = -1
Query: 541 DSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEHYI 407
D+L +F+ + +VL+AT VA G+D+P N VI F + T+ Y+
Sbjct: 414 DTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYV 458
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 41.1 bits (92), Expect = 2e-04
Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = -1
Query: 574 LHGALNQPQRLDSLKRFREQ-QADVLVATDVAARGLDIPGVNTVINFTLPATLEHYIH 404
LHG Q R + ++F++ + VL TD+A+RGLDIP V+ V+ P + + H
Sbjct: 288 LHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 34.3 bits (75), Expect = 0.020
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = -1
Query: 595 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 443
LG+ A L G N +R ++ FR+++ VLV V G DIP ++ ++
Sbjct: 288 LGIDARALFGETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNIDCLM 338
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 34.3 bits (75), Expect = 0.020
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = -1
Query: 595 LGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPAT 422
+G A ++Q + +++K+F++ + + L+AT + GLDI V+ +I + A+
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASAS 522
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 32.7 bits (71), Expect = 0.062
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARG 473
L FV + +RL + L G+K+ L+ L RL L+++ + +++ATD +
Sbjct: 264 LIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMM 323
Query: 472 LDIPGVNTVINF 437
+I + ++F
Sbjct: 324 GEIEELENNVDF 335
Score = 32.3 bits (70), Expect = 0.082
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 481 ARGLDIPGVNTVINFTLPATLEHYIH 404
ARGLD V V+NF +P+ + YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 32.3 bits (70), Expect = 0.082
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = -1
Query: 592 GVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVINFTLPATLEH 413
G+KA H L + +R ++ ++VAT G+D V VI+ + P +LE
Sbjct: 767 GLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEG 826
Query: 412 Y 410
Y
Sbjct: 827 Y 827
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 562 LNQPQRLDSLKRFREQQADVLVATDVAARGLDIPGVNTVI 443
+NQ Q+ +++ +FR + LVAT + GLDI + +I
Sbjct: 515 MNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMII 554
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VLVA 494
+ F +TK+ +H L + A H G ++ +R + FR +++A
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 493 TDVAARGLDIPGVNTVINFTLPATLEHYI 407
T G++ GV V+++ LPA+ Y+
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.1 bits (62), Expect = 0.77
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -3
Query: 203 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEK 48
E+ +EK + K+E + K + L ++E + + +R+ W Q+PK + K
Sbjct: 999 EDLSEKDLKKIEAKATKKKK-LTRNEIKAKERRARERELAWLQSPKGTEKPK 1049
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 29.1 bits (62), Expect = 0.77
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Frame = -1
Query: 652 LFFVQTKRQAHRLHVMLGMLGVKAAELH-----GALNQPQRLDSLKRFREQQAD--VLVA 494
+ F +TK+ +H L + A H G ++ +R + FR +++A
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDL-FAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 493 TDVAARGLDIPGVNTVINFTLPATLEHYI 407
T G++ GV V+++ LPA+ Y+
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYV 1506
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 1.0
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = -3
Query: 191 EKQMNKMEKQTAKLEVVL-KKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEK 15
E ++N +E + V +KDE + + E +R+++ + K+K+E+KE+ EK
Sbjct: 416 EAEVNGVEDSKKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEK------KEK 469
Query: 14 KKK 6
KKK
Sbjct: 470 KKK 472
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 245 KLIKLEPEIVAILDEEYAEKQMNKMEKQTA 156
K+I EPE+ AI D E ++KQ+ + E + A
Sbjct: 116 KMINEEPELKAIEDTEESKKQLQREESKEA 145
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -3
Query: 203 EEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRD 84
E ++ K E+ AK + L +DE +P P H RD
Sbjct: 404 ERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRD 443
>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 327
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -3
Query: 179 NKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVEKKKKK 3
+K++ + E LKK+E + + E + Q Q K+K +EKER+ E+ KK
Sbjct: 269 SKLDLEIESGEYFLKKEEKERKKRAEKKEQ----QKEKKKEKEKERMKAFIPPEESSKK 323
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Frame = -3
Query: 275 RPISSPNXREKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQ 96
R + +EK + ++ +EE ++ ++ +Q A+ + K+ E + E +
Sbjct: 586 RELKKIREKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQR 645
Query: 95 RQRD----WFQTPKQKREEKERLALTTHVEKKKKK 3
+R+ + +QKREEK++ EKK KK
Sbjct: 646 LKREQEKKQQELERQKREEKQK---QKEREKKLKK 677
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 643 RKTTVRSRNVRXTSAASIASRVALALLAYP 732
RKT + R VR T+ +SI S+ ++ YP
Sbjct: 7 RKTKSKDREVRKTNDSSILSKASVEKCGYP 36
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.8 bits (54), Expect = 7.1
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = -3
Query: 206 DEEYAEKQMNKMEKQ---TAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREEKERLA 36
++E Q NK++ +A +E V +K+ + + E + +QKREEK RLA
Sbjct: 608 EQEQVSNQANKVDLNKIISAAMESVNQKNVLKAQKEEEER-------IAQQKREEKRRLA 660
Query: 35 LTTHVEKKKKK 3
+++ KK
Sbjct: 661 YEESLKRHAKK 671
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 194 AEKQMNKMEKQTAKLEVVLK-KDEAQPGPQHEPQRQRDWFQTPKQKREEKERLALTTHVE 18
AE++ + ++ AK E K K EA+ + E + + KRE +E++ T
Sbjct: 637 AEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEEN 696
Query: 17 KKKK 6
K+K
Sbjct: 697 AKRK 700
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Frame = -3
Query: 245 KLIKLEPEIVAI-LDEEYAEK-QMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQT 72
+L KLE V + ++E ++ ++NK + + K +++ + AQ +HE + +
Sbjct: 301 ELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEA 360
Query: 71 PKQKREE-KERLALTTHVEKKK 9
KQ+ + +E + T KK
Sbjct: 361 AKQRMDNIREEYKVITQERNKK 382
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +1
Query: 688 ASIASRVALALLAYPHELLXSXLKA 762
A+ S++A + + YPHE+L + L++
Sbjct: 292 AATLSKIAASTVTYPHEVLRTRLQS 316
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/75 (24%), Positives = 28/75 (37%)
Frame = -3
Query: 230 EPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTPKQKREE 51
E ++V I ++Y+ NK ++ + H P W KR
Sbjct: 162 EEDLVRISSDKYSSALQNKYHLIKILTSLIEESKRNAEKFSHVPLNTGHWKYKKCDKRMP 221
Query: 50 KERLALTTHVEKKKK 6
+E LA T + KKK
Sbjct: 222 QEWLADATTLTSKKK 236
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 588 TPSMPSMTWRRCAWRLVCTKN 650
T MP+++W+R +RL+ KN
Sbjct: 294 TADMPTVSWQRVLYRLLKLKN 314
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,181
Number of Sequences: 5004
Number of extensions: 39467
Number of successful extensions: 179
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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