Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B09
         (796 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       69   7e-14
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   10.0 

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 68.5 bits (160), Expect = 7e-14
 Identities = 35/85 (41%), Positives = 50/85 (58%)
 Frame = -1

Query: 658 GPLFFVQTKRQAHRLHVMLGMLGVKAAELHGALNQPQRLDSLKRFREQQADVLVATDVAA 479
           G L FV+ K++A  + V L         +HG   Q QR ++L  F+  +  +LVAT VAA
Sbjct: 453 GTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILVATAVAA 512

Query: 478 RGLDIPGVNTVINFTLPATLEHYIH 404
           RGLDI  V+ VIN+ LP  ++ Y+H
Sbjct: 513 RGLDIKNVSHVINYDLPKGIDEYVH 537


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 107 HEPQRQRDWFQTPKQKREEKERL 39
           H P +Q+   Q  +Q+R+E+ RL
Sbjct: 160 HRPYQQQQQQQQRQQQRQEERRL 182



 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/68 (14%), Positives = 34/68 (50%)
 Frame = -3

Query: 248  EKLIKLEPEIVAILDEEYAEKQMNKMEKQTAKLEVVLKKDEAQPGPQHEPQRQRDWFQTP 69
            +K    + +++     +  ++Q  + ++Q  + +   ++ +     Q +PQ+Q+   Q  
Sbjct: 1482 DKKSACDSKLIVDHSSQKTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQ 1541

Query: 68   KQKREEKE 45
            + ++++KE
Sbjct: 1542 QPQQQQKE 1549


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 306  ASKPVKSRQIPPDIVAKXQGETDQTRTGD 220
            A +P  S+++PP+ +     E D+TR  D
Sbjct: 1222 AEEPT-SQKVPPNQLTHEASELDKTRRYD 1249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,999
Number of Sequences: 438
Number of extensions: 3080
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)