Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B08
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           23   3.3  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           23   3.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   9.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   9.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   9.9  

>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 712 KPPSPXDXGYINPIIKSPIPYTNHPRLNI 626
           KPP P D  Y+ P   SP     +P+L I
Sbjct: 70  KPPGPKDLVYLEP---SPPFCEKNPKLGI 95


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 712 KPPSPXDXGYINPIIKSPIPYTNHPRLNI 626
           KPP P D  Y+ P   SP     +P+L I
Sbjct: 71  KPPGPKDLVYLEP---SPPFCEKNPKLGI 96


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 531 PSSLGMAKGVSPPYFQVNDESQASRLVS 448
           P+S+G++  VS P F+V    Q +  +S
Sbjct: 174 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 201


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 531 PSSLGMAKGVSPPYFQVNDESQASRLVS 448
           P+S+G++  VS P F+V    Q +  +S
Sbjct: 113 PNSVGVSNEVSLPQFKVLGHRQRAMEIS 140


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 270  DVDSGVYDRRNLEGQFL 320
            DV  G+YD     G FL
Sbjct: 1268 DVSEGIYDGSGANGSFL 1284



 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = -3

Query: 716 HQATLPXGXRXHQPDHQIPDSIHQPPQ 636
           HQ+T P      QP  Q      QP Q
Sbjct: 817 HQSTHPQAQAQAQPQQQQQQQQQQPQQ 843


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 685 YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 584
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 685 YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 584
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = -1

Query: 685 YINPIIKSPIPYTNHPRLNIHFHQSPDAVLEGVR 584
           Y +P+  + + Y N  +     +Q  D   EGV+
Sbjct: 266 YYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQ 299


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,625
Number of Sequences: 438
Number of extensions: 4713
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)