Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_B07
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 46 6e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 2e-05
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 44 3e-05
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 42 1e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 41 2e-04
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 41 2e-04
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 41 2e-04
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 41 2e-04
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 3e-04
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 40 4e-04
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 38 0.002
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 38 0.002
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 38 0.002
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 37 0.004
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 36 0.009
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 35 0.012
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 35 0.012
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 33 0.036
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 33 0.048
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 33 0.048
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 32 0.084
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 29 0.79
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.79
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 28 1.8
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 46.0 bits (104), Expect = 6e-06
Identities = 21/34 (61%), Positives = 23/34 (67%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
VLV TDV A GLDIP V VIN T P T+ Y+H
Sbjct: 469 VLVATDVAARGLDIPKVQLVINVTFPLTIEDYVH 502
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.4 bits (100), Expect = 2e-05
Identities = 21/40 (52%), Positives = 24/40 (60%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
R + +LV TDV + GLDIP V VINF LP YIH
Sbjct: 305 RAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIH 344
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIHXXXXXXXXXXXXXXVSXAGE 373
R+ + + L+ TDV + G+DI G+ VIN+ PAT Y+H ++ AGE
Sbjct: 551 RDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGE 610
Query: 372 GE 367
G+
Sbjct: 611 GD 612
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 41.5 bits (93), Expect = 1e-04
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
R+ VL+ TD+ A G+D+ V+ VIN+ LPA +YIH
Sbjct: 307 RQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIH 346
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 41.1 bits (92), Expect = 2e-04
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
R + D+LV TD+ G+DIP V+ V+N+ + ++ Y H
Sbjct: 563 RNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTH 602
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/33 (57%), Positives = 22/33 (66%)
Frame = -3
Query: 531 LVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
LV TDV A GLDIP V+ VIN+ +P YIH
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIH 371
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
VLV TDV A G+DIP V VI++ +P T Y+H
Sbjct: 442 VLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVH 475
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
R + ++V T V + GLDIP V VIN+ LP + Y+H
Sbjct: 477 RSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVH 516
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 40.3 bits (90), Expect = 3e-04
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
R+ + VL+ TD+ A G+D GV VINF P ++ YIH
Sbjct: 335 RKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIH 374
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
+L+ TD+ A G+D+ V+ VIN+ LPA +YIH
Sbjct: 311 ILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 37.9 bits (84), Expect = 0.002
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
R+ Q +L TDV A G+D P + V+ T P+ YIH
Sbjct: 340 RKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIH 379
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 579 SAWTL*SVXREQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
S L S + +L+ TDV A GLD+P V+ V+ + P + Y+H
Sbjct: 484 STLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLH 532
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 573 WTL*SVXREQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
W L + R + ++V TDV + G+D+ G+ V N+ P Y+H
Sbjct: 410 WVL-NEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVH 455
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 537 DVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
DVL+ T V A GLD+ + V+N+ P + Y+H
Sbjct: 720 DVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVH 754
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 35.5 bits (78), Expect = 0.009
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 531 LVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
LV +D+ G+DI VN VINF P Y+H
Sbjct: 335 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLH 367
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 35.1 bits (77), Expect = 0.012
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
+ V TDV G+DI VN VIN+ +P + Y+H
Sbjct: 348 ICVATDVFGRGIDIERVNIVINYDMPDSPDSYLH 381
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 35.1 bits (77), Expect = 0.012
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
VL TD+ A GLD P V+ VI P + YIH
Sbjct: 338 VLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIH 371
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 33.5 bits (73), Expect = 0.036
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
+L+ T+V A GLDIP V+ ++ + P YIH
Sbjct: 389 ILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIH 422
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 33.1 bits (72), Expect = 0.048
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 537 DVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
++LV +D+ A G+D+ VIN+ P ++ Y+H
Sbjct: 489 NLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVH 523
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 33.1 bits (72), Expect = 0.048
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 537 DVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
++LV TDV + G+DIP + VIN+ P ++H
Sbjct: 398 NLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVH 432
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 32.3 bits (70), Expect = 0.084
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -3
Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLP 457
VLV T+V A G+D+ VN V+N+ +P
Sbjct: 405 VLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 510 AXGLDIPGVNTVINFTLPATLXHYIH 433
A GLD V V+NF +P+ YIH
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIH 412
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 552 REQQXDVLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
+ + VL TD+ + GLDIP V+ V+ P + H
Sbjct: 306 KSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSH 345
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 510 PSRLXPPAHRXVAPGKRFXESKRWGWFKAPC 602
PSRL G+ F KRWG+ + PC
Sbjct: 2132 PSRLNIEQELQKPSGRSFACKKRWGFLQMPC 2162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,846
Number of Sequences: 5004
Number of extensions: 23350
Number of successful extensions: 52
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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