Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B07
         (812 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       38   8e-05
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   1.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 38.3 bits (85), Expect = 8e-05
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = -3

Query: 534 VLVXTDVTAXGLDIPGVNTVINFTLPATLXHYIH 433
           +LV T V A GLDI  V+ VIN+ LP  +  Y+H
Sbjct: 504 ILVATAVAARGLDIKNVSHVINYDLPKGIDEYVH 537


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +1

Query: 7   FFFLSRMLXVYAMXCAXPIHITLPGIRXTV 96
           FFF +  L V A  C    H+T P  R  V
Sbjct: 150 FFFAATSLLVVAEVCYFTAHVTHPRHRLCV 179


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 605 VTRSLEPAPALGLXEAFXGSNXPMCWW 525
           + ++L+P PA+ L  +  G+  P   W
Sbjct: 429 IEQTLQPGPAVSLKCSAAGNPTPQVTW 455


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 605 VTRSLEPAPALGLXEAFXGSNXPMCWW 525
           + ++L+P PA+ L  +  G+  P   W
Sbjct: 429 IEQTLQPGPAVSLKCSAAGNPTPQVTW 455


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,593
Number of Sequences: 438
Number of extensions: 1866
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)