Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B05
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   112   5e-26
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   111   8e-26
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    28   1.3  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.7  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   4.0  
SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    26   7.0  
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    26   7.0  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  112 bits (270), Expect = 5e-26
 Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 2/130 (1%)
 Frame = -3

Query: 768 RGPXIIXKXDSGFDXRLPATXPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 589
           RGP ++   D+G   +     PGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDAGI-VKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 588 FGSWKTPSKQKKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 415
           FGS    ++ KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEAAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 414 NKAMLKLNPY 385
              + +LNPY
Sbjct: 324 KAVLARLNPY 333


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  111 bits (268), Expect = 8e-26
 Identities = 60/130 (46%), Positives = 80/130 (61%), Gaps = 2/130 (1%)
 Frame = -3

Query: 768 RGPXIIXKXDSGFDXRLPATXPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPL 589
           RGP ++   D+G   +     PGVE           LAPGGHLGRFVIWT+SAFG LD +
Sbjct: 205 RGPLVVFNEDTGI-VKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSV 263

Query: 588 FGSWKTPSKQKKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPN-KRVIRA-TRKLNPLTN 415
           FGS    ++ KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL N
Sbjct: 264 FGSTTEVAQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKN 323

Query: 414 NKAMLKLNPY 385
              + +LNPY
Sbjct: 324 KAVLSRLNPY 333


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +1

Query: 382 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 543
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 564 KQKKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 388
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 641 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 507
           +D+ S+ LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 635 VSSSGLSPHSAGLTPYSGHGRHHRNK 558
           VS S    HS    P+S  GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145


>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 620 VQMTKRPR*PPGASFRRFSLLTFRSSTPGXVAGRRXSNPES 742
           V+  ++P+ P G +++R   +    +    V G+R  NP S
Sbjct: 21  VEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 620 VQMTKRPR*PPGASFRRFSLLTFRSSTPGXVAGRRXSNPES 742
           V+  ++P+ P G +++R   +    +    V G+R  NP S
Sbjct: 21  VEKQEKPKQPKGRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,709
Number of Sequences: 5004
Number of extensions: 36371
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)