Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B05
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   100   2e-21
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    30   1.6  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 52/128 (40%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
 Frame = -3

Query: 765 GPXIIXKXDSGFDXRLPATXPGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLF 586
           GP +I   D+    R     PGV+           LAPGGHLGR +IWT+SAF +LD ++
Sbjct: 205 GPVVIYGQDAEC-ARAFRNIPGVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIY 263

Query: 585 GSWKTPSKQ-KKNFNLPQPKMANTDLTRLFKSDEIRKVLRAPNKRVIRATRKLNPLTNNK 409
           G+    S Q KK +++P P MAN+D +R+ +S+E+ K +RAP K  +      NPL    
Sbjct: 264 GTTVANSSQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRT 323

Query: 408 AMLKLNPY 385
            + KLNPY
Sbjct: 324 LLYKLNPY 331


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
           protein F44D12.1 protein.
          Length = 1034

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = -1

Query: 638 DVSSSGLSPHSAGLTPYSG---HGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV 468
           + ++S   P+S   TP S     G+ HR     S      +PT+     SS+M S  S  
Sbjct: 532 NTTTSDARPYSMHFTPTSSTIMEGKPHRRSAVYSPSHPPVYPTIRDDSMSSVMSSSNSIR 591

Query: 467 LPTNA*SVLHAN*TRSPIT 411
           LP+ + S  + N +   +T
Sbjct: 592 LPSTSFSNQYPNNSTCSLT 610


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,671,976
Number of Sequences: 27780
Number of extensions: 214961
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)