Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_B02
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   3.1  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   7.1  
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran...    26   7.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    25   9.4  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = -2

Query: 374 PVRRPRCISRNDVLRDFPGDEIPSYHQDGYRRRRTFGAHCGTVCL 240
           P+ +    +  D+       ++  Y    +++  +FGAHC  +CL
Sbjct: 68  PITKVVSCATQDIFYALSDSQVYVYQISTFKKLFSFGAHCQNMCL 112


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
 Frame = +3

Query: 162 EKGARSTCPAERLPT--KPHRAPPHRLHQTYGTAVRAESPPSPVPVLMIRRDFISGKIPK 335
           ++GA S  PA   P    PH          +     +  PP P P L+          PK
Sbjct: 334 DRGAFSAPPAPFFPLGFSPH-LNDESSRSRWSNISYSPPPPPPPPELL-------NHSPK 385

Query: 336 DVISGDTPWAAHRSHLAPPHHRTDSR 413
               GD P+  +R++   P  RT+ R
Sbjct: 386 SRPLGDKPYLFYRNNQIGPRTRTEGR 411


>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 166 KAREALAPQNDYRLNPIELHHTGYTR 243
           K   A+  + DY LN   + H GY R
Sbjct: 254 KNERAIIAEEDYMLNHTRIKHKGYAR 279


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +3

Query: 132 PXIPRKRLRLEKGARSTCPAERLPTKPHRAPPHRLHQTYGTAVRAES 272
           P +      L++  +S C     P+    APP +L+++Y + + + S
Sbjct: 375 PELSASSAELDEKLKSQCNVSPSPSNISDAPPSKLNRSYSSPLASIS 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,506
Number of Sequences: 5004
Number of extensions: 49487
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)