Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_A04
(783 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 134 1e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 132 4e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 33 0.046
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.3
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 28 1.3
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.3
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.0
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 7.0
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 134 bits (324), Expect = 1e-32
Identities = 69/119 (57%), Positives = 81/119 (68%)
Frame = -2
Query: 686 AYCGRFTPGAFTKPDPSCIPVNLVS*LYWDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
A GRFTPG FT + + DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 100 AIAGRFTPGNFTNYITRTYREPRLI-VVTDPRADAQAIKEASFVNIPVIALCDTDSILNH 158
Query: 506 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 330
VDIAIP N K SIGL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+
Sbjct: 159 VDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217
Score = 45.6 bits (103), Expect = 8e-06
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = -3
Query: 775 IXXPXDVXVISSRPFGQRAVXKFAAHTGXTXIA 677
I P DV V+S+R +G RAV KFAAHTG T IA
Sbjct: 70 IENPADVCVVSTRTYGHRAVLKFAAHTGATAIA 102
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 132 bits (320), Expect = 4e-32
Identities = 68/120 (56%), Positives = 81/120 (67%)
Frame = -2
Query: 686 AYCGRFTPGAFTKPDPSCIPVNLVS*LYWDPAQDHQPITEASYVNIPVIALCNTDSPLRF 507
A GRFTPG FT + + DP D Q I EAS+VNIPVIALC+TDS L
Sbjct: 101 AIAGRFTPGNFTNYITRTYREPRLI-IVTDPRADAQAIKEASFVNIPVIALCDTDSILNH 159
Query: 506 VDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 327
VD+AIP N K SIGL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 160 VDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/33 (72%), Positives = 25/33 (75%)
Frame = -3
Query: 775 IXXPXDVXVISSRPFGQRAVXKFAAHTGXTXIA 677
I P DV VISSRP+G RAV KFAAHTG T IA
Sbjct: 71 IENPADVCVISSRPYGHRAVLKFAAHTGATAIA 103
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 33.1 bits (72), Expect = 0.046
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 599 DPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAR 435
+P ++ EA ++P I + +TD+ R V IP N S L+ LL+R
Sbjct: 187 NPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +1
Query: 370 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 468
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 572 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 462
T A + + LC+ +S RF D+A+ NTK +H I
Sbjct: 75 TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 464 IGLMWWLLAREVLRLRGVLPRDQRWD 387
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 409 FPVTSAGML--WLICSSTVTLKKVKRM 335
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 683 YCGRFTPGAFTKPDPSCIPVNLVS*LYWDPAQDHQPITEASY 558
YC F F+K S I ++V YW +D+ E Y
Sbjct: 358 YCDNFKKNYFSKFKDSEITEDIVEKEYWKLVKDNNTSLEVEY 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,890
Number of Sequences: 5004
Number of extensions: 58113
Number of successful extensions: 171
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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