Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_P24
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 91 1e-19
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 40 6e-04
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 36 0.006
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 36 0.007
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 35 0.017
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 33 0.051
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 33 0.051
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 30 0.48
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 29 0.84
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 29 0.84
SPAC1002.01 ||SPAC1610.05|conserved fungal protein|Schizosacchar... 29 0.84
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 1.1
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 1.1
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 28 1.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 28 1.5
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 28 1.9
SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces... 28 1.9
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 27 2.6
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 27 3.4
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 3.4
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 27 4.5
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha... 27 4.5
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 27 4.5
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 26 5.9
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 5.9
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 26 5.9
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 26 7.8
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 7.8
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 26 7.8
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 26 7.8
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 26 7.8
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 91.5 bits (217), Expect = 1e-19
Identities = 63/221 (28%), Positives = 103/221 (46%)
Frame = +3
Query: 96 LGDIQISNEYMELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLF 275
LG+++ + + E ++++ A E + + + + L + +D +VR LR+ GEP+ F
Sbjct: 9 LGELE-TRPFSEGITRFTKEQAAYYAEQKEKDRIKALKIPYEDSKVREYLRRYGEPITYF 67
Query: 276 GEGPAERRVRLRDLLSYLGEDAINKKXXXXXXXXXXXXXXXXTWYHEGPPTLRQARIWIA 455
GE RR RL+ L+ E ++ T Y +G L AR IA
Sbjct: 68 GEDALARRQRLQQLMI---EKSLEGDNPLDVDQGASENIEKET-YVQGSHELLVARKKIA 123
Query: 456 RYSLPNAKKRLNKAREELKLAGSVRAAAKQESQRKASAFXIYCSQIGDTRPLSFCRFSQD 635
YSL AK RL K RE ++ + + S + SQIG RP++ RFS +
Sbjct: 124 LYSLEKAKLRLKKEREISEIPVPEIVLSGKSSIEHLQKAELMGSQIGGERPIAIVRFSNN 183
Query: 636 SKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP 758
+ SW G VKVW+ + + +Q+ +G VS ++P
Sbjct: 184 GNHFASGSWGGQVKVWNSDNLSEVQLFRGHTDRVSGLDWYP 224
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/41 (29%), Positives = 16/41 (39%)
Frame = +3
Query: 645 LITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKAE 767
L T + V +W PL L+G V FHP +
Sbjct: 238 LATGAADNTVCLWKASQSTPLLRLEGHLARVGRVAFHPSGD 278
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 39.5 bits (88), Expect = 6e-04
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 621 RFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP 758
R D+K+L T+ W G +V+S APL VLK ++ FHP
Sbjct: 303 RIRSDNKILATAGWDGRGRVYSCQTLAPLAVLKYHSDGINSLAFHP 348
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +3
Query: 633 DSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPK 761
D LIT+ L+KVW A +++L+G NVS A FH K
Sbjct: 197 DKPYLITAGDDNLIKVWDYQTKACVRILEGHTNNVSFAFFHSK 239
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 35.9 bits (79), Expect = 0.007
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKA 764
G P+ +FS T+S ++W V APL+V G +V +FHP A
Sbjct: 443 GHNAPIWDVQFSPFGYYFATASHDQTARLWDVEHAAPLRVFVGHQNDVDCVSFHPNA 499
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/58 (24%), Positives = 24/58 (41%)
Frame = +3
Query: 585 SQIGDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP 758
S IG TRP+ S + +++ S G ++WS + + G + F P
Sbjct: 398 SLIGHTRPVFGVSISPQKEFILSCSEDGFTRLWSKDTKSTIVKYAGHNAPIWDVQFSP 455
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 34.7 bits (76), Expect = 0.017
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +3
Query: 561 ASAFXIYCSQIGDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVS 740
A F + C+ G R +S +++ SK L ++S +++W ++ LKG VS
Sbjct: 83 ALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVS 142
Query: 741 XATFHPKAEL 770
F+P L
Sbjct: 143 SIDFNPLGTL 152
Score = 32.3 bits (70), Expect = 0.090
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 564 SAFXIYCSQIGDTRPLSFCRFSQDSKMLITSSWSGLVKVWS 686
S F YC+ G + ++ S + + + TSS G +K+WS
Sbjct: 42 SGFSEYCTLFGHEKSVTCVSVSPNKRWIATSSSDGTIKIWS 82
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVL 716
G T +S F+ +L++ SW V++W++ D L++L
Sbjct: 136 GHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQDGTCLRML 176
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 33.1 bits (72), Expect = 0.051
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQV--LKGXXCNVSXATFHPKAE 767
G R +++C F +++++ LVK+W + +V +G NVS FHP E
Sbjct: 210 GHDRGVNWCAFHPTLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCLFHPHQE 269
Query: 768 L 770
L
Sbjct: 270 L 270
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = +3
Query: 618 CRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKAEL 770
C F + +++ S +++W+ + +L G V A FHP +L
Sbjct: 101 CTFHHEYPWILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPSEDL 151
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/59 (22%), Positives = 25/59 (42%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKAEL 770
G +S C F ++++++S ++VW + +Q + T HPK L
Sbjct: 254 GHFNNVSCCLFHPHQELILSASEDKTIRVWDLNRRTAVQTFRRDNDRFWFITVHPKLNL 312
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 33.1 bits (72), Expect = 0.051
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKA 764
G T P+ F T+S ++WS PL+V G +V TFHP +
Sbjct: 419 GHTGPVWDVAFGPFGHYFATASHDQTAQLWSCDHIYPLRVFAGHLSDVDCVTFHPNS 475
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 606 PLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP 758
P+ FS D+K L++ S ++WSV L KG V F P
Sbjct: 381 PVYGTTFSPDNKYLLSCSEDASARLWSVDTKTALVAYKGHTGPVWDVAFGP 431
Score = 27.5 bits (58), Expect = 2.6
Identities = 10/53 (18%), Positives = 26/53 (49%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATF 752
G T+P++ + D + ++ GL+ +W + ++ ++G N+ +F
Sbjct: 503 GHTQPVTAVAIAPDGHTMASADSEGLIHLWDIGTGRRIKTMRGHRGNIYSLSF 555
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 29.9 bits (64), Expect = 0.48
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 603 RPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP-KAELPSX 779
R ++ + S+D +++ ++S +K+W + VL+G V +F+P +L S
Sbjct: 466 RDVNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRRGVWACSFNPFSRQLASG 525
Query: 780 SGXR 791
SG R
Sbjct: 526 SGDR 529
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKG 722
G R + C F+ S+ L + S +++W+V +Q L+G
Sbjct: 505 GHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEG 547
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 633 DSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNV 737
+S+ +IT SW +VW++ C VLKG +V
Sbjct: 108 NSETIITGSWDSTARVWALGQCK--YVLKGHQSSV 140
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 29.1 bits (62), Expect = 0.84
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 618 CRFSQDSKMLITSSWSGLVKVWSV 689
C +S DS++L++SS +KVW V
Sbjct: 437 CAWSTDSRLLVSSSQDTTLKVWDV 460
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVS 740
G T P++ R+ + + +SS+ +++W D L +LKG V+
Sbjct: 267 GHTAPITCVRWGGQN-WIYSSSYDKTIRIWDAKDGKCLHILKGHAARVN 314
>SPAC1002.01 ||SPAC1610.05|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 29.1 bits (62), Expect = 0.84
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 663 SGLVKVWSVPDCAPLQVLKGXXCNVSXATFH 755
SGL K +P +PLQ LKG ++ FH
Sbjct: 9 SGLAKTLHIPSRSPLQALKGSFILLNKRKFH 39
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVW 683
G RP+ FSQD + +++S+ +K+W
Sbjct: 308 GHARPIRDLSFSQDGRSFLSTSFDKTIKLW 337
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 1.1
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSV 689
G T ++ F D K L TSS G VKVW +
Sbjct: 81 GHTNNVTAIAFHCDGKWLATSSEDGTVKVWDM 112
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +3
Query: 642 MLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKAE 767
+++++S+ G ++VW L VL+G V T +P +
Sbjct: 589 LIVSASYDGTLRVWKASTGVCLHVLRGHVGRVYSVTINPSRQ 630
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/55 (23%), Positives = 23/55 (41%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP 758
G P+S F+ +L + SW V++W + + + +V FHP
Sbjct: 465 GHEGPVSSLSFNSSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHP 519
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 609 LSFCRFSQDSKMLITSSWSGLVKVWSV 689
LS ++S D + +IT + G +KVW +
Sbjct: 342 LSTLQYSSDGQRIITGADDGKIKVWDM 368
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +3
Query: 444 IWIARYSLP---NAKKRLNKAREELKLAGSV-RAAAKQESQR 557
+W+A L NAKK LNKAR+ ++ + V AAA+ E Q+
Sbjct: 406 LWLALARLETYENAKKVLNKARQTIRTSHEVWIAAARLEEQQ 447
>SPAC3F10.08c |||rRNA processing protein Faf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +3
Query: 126 MELEEEISRDKKALLEEFERRRKARQLNVSTDDDEV 233
+E EEEI K+ EE + R+++RQ + +DDDEV
Sbjct: 100 LEDEEEILAKKR---EEQKLRKRSRQNDDGSDDDEV 132
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 585 SQIGDTRPLSFCRFSQDSKMLITSSWSGLVKVWS 686
S G +S + D ML T SW V++WS
Sbjct: 269 SLTGHENRISSLALTSDGTMLATGSWDECVRLWS 302
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +3
Query: 591 IGDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHP 758
+G +S C++ D +L T S W + + VLKG ++ F P
Sbjct: 103 VGHAGFVSCCKYVDDGHLL-TGSGDKTCMFWDIEQAKAISVLKGHEMDIVSLDFLP 157
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 3.4
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 633 DSKMLITSSWSGLVKVW 683
D ++++T SW G +K+W
Sbjct: 115 DRRIVVTGSWDGTIKLW 131
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVP 692
G + L+ FS + L+T+S G ++ W +P
Sbjct: 570 GHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLP 602
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.6 bits (56), Expect = 4.5
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSV--PDCAPLQVLKGXXCNVS 740
G ++ R+++DS +L + S+ V++W +P+QVL +VS
Sbjct: 96 GHLAQINTIRYNEDSSILASGSFDSKVRLWDCRSNSFSPIQVLADAKDSVS 146
>SPBC32H8.09 |||WD repeat protein, human WDR8
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 579 YCSQIGDTRPLSFCRFSQDSKMLITSSWSGLVKVWSV 689
Y S D PLS +S ++L+ SS+ + VWS+
Sbjct: 93 YASIQCDQDPLSSISWSPSGELLLWSSFDSKITVWSL 129
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 228 EVRRSLRQLGEPVCLFGEGPAERRVRLRDLLSY 326
E+ LR++ EP+ LFGE R LL Y
Sbjct: 128 EIIAKLREMKEPIRLFGESEEATIQRYYSLLKY 160
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 603 RPLSFCRFSQDSKMLITSSWSGLVKVWSV 689
+PL+ +FS D +L T+S G V W +
Sbjct: 119 QPLTILKFSNDGMVLFTASNDGDVFAWLI 147
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSVP--DC 698
G P+ S DSK+L+T S VK+W + DC
Sbjct: 574 GHKLPVLSMDISYDSKLLVTCSADKNVKIWGLDFGDC 610
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 5.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 600 TRPLSFCRFSQDSKMLITSSWSGLVKVWS 686
T P+S FS + + L T SG V +WS
Sbjct: 475 TAPVSALSFSHNGRYLATGDTSGGVCIWS 503
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +3
Query: 606 PLSFCRFSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFH 755
P++ +F + L T+ G+V W + L+VL N+S +F+
Sbjct: 235 PVNDLKFHPIHQTLATAGGDGVVAFWDIQVRKRLRVLNPSKINISSISFN 284
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +3
Query: 135 EEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAER 296
E I + K+ E +RR++ RQL T DDE S LG F + A R
Sbjct: 472 ETTIEKYKRKAAERKQRRKELRQLK-KTKDDEGEGSDVDLGFDDPFFKDKDASR 524
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/38 (31%), Positives = 26/38 (68%)
Frame = +3
Query: 129 ELEEEISRDKKALLEEFERRRKARQLNVSTDDDEVRRS 242
+L+EE + ++ +LE + ++KA + ++S DDE ++S
Sbjct: 902 QLQEERQKMQEEVLEWRKSQQKASEDDMSLSDDEEKQS 939
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = +3
Query: 594 GDTRPLSFCRFSQDSKMLITSSWSGLVKVWSV 689
G + +S C S DS +++SW +++W +
Sbjct: 61 GHSHFVSDCALSFDSHYALSASWDKTIRLWDL 92
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 624 FSQDSKMLITSSWSGLVKVWSVPDCAPLQVLKGXXCNVSXATFHPKAEL 770
FS + +T+S G +KVW+ L G +V +HP L
Sbjct: 172 FSPNDSKFVTASDDGSLKVWNFHMSTEELKLTGHGWDVKTVDWHPSKGL 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,562
Number of Sequences: 5004
Number of extensions: 40574
Number of successful extensions: 209
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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