Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_P19
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.18
02_01_0003 + 13079-13610,14005-14312,14364-14549,14620-14707,148... 32 0.71
07_03_1747 + 29188568-29188715,29188793-29189541 31 1.6
07_01_0479 + 3606663-3607448 30 2.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 30 2.2
12_01_0524 - 4167867-4168445 29 3.8
03_06_0471 + 34169562-34169892,34170121-34170347 29 5.0
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.6
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.7
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 28 8.7
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.7
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.18
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -2
Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>02_01_0003 +
13079-13610,14005-14312,14364-14549,14620-14707,
14807-14887,14980-15044,15357-15497,15578-15694,
15995-16237,16326-16383,18127-18224
Length = 638
Score = 31.9 bits (69), Expect = 0.71
Identities = 16/37 (43%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Frame = +3
Query: 696 FPXVFPGKXXPGXXPXGXGPGXXXGA-PGXXPPXGXP 803
FP PG PG P G PG G PG P G P
Sbjct: 541 FPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMPGGVP 577
Score = 31.5 bits (68), Expect = 0.94
Identities = 18/44 (40%), Positives = 18/44 (40%)
Frame = +3
Query: 672 GGXXXLXMFPXVFPGKXXPGXXPXGXGPGXXXGAPGXXPPXGXP 803
GG FP PG PG P G PG G PG P G P
Sbjct: 524 GGASPRGGFPGGMPGGGFPGGMPGGGFPG---GMPGGGFPGGMP 564
Score = 30.3 bits (65), Expect = 2.2
Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 826 GGXXAGXXGXPXGGXXPGAPXXX-PGPXPXGXXPGXXFPGKTXGNI 692
GG G G P GG G P PG P G PG PG GN+
Sbjct: 538 GGGFPG--GMPGGGFPGGMPGGGFPGGMPGGF-PGGAMPGGVPGNV 580
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/50 (32%), Positives = 17/50 (34%)
Frame = -2
Query: 823 GXXAGXXGXPXGGXXPGAPXXXPGPXPXGXXPGXXFPGKTXGNIXNXXXP 674
G + G P G G P PG G PG FPG G P
Sbjct: 524 GGASPRGGFPGGMPGGGFPGGMPGGGFPGGMPGGGFPGGMPGGFPGGAMP 573
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +3
Query: 396 PPPGTTLSAPVYLITAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 548
PPP TT++ V L TA + S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>07_01_0479 + 3606663-3607448
Length = 261
Score = 30.3 bits (65), Expect = 2.2
Identities = 18/45 (40%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +3
Query: 699 PXVFPGKXXPGXXPXGXGPGXXXGA--PGXXPPXGXPXXPAXXPP 827
P V PG PG P G PG PG PP P P PP
Sbjct: 218 PQVRPGM--PGGPPPGMRPGMPPPPFRPGMPPPPPGPQQPGQNPP 260
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/34 (44%), Positives = 15/34 (44%)
Frame = +3
Query: 726 PGXXPXGXGPGXXXGAPGXXPPXGXPXXPAXXPP 827
P P G G G GAP PP P PA PP
Sbjct: 305 PHPLPPGAGAGAGTGAP--PPPPAHPAAPAPPPP 336
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 160 CEERVDHEGQ*C 125
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 29.1 bits (62), Expect = 5.0
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 708 FPGKXXPGXXPXGXGPGXXXGAPGXXPPXGXPXXPAXXPPXXXG 839
+PG P P G P PG PP G P P P G
Sbjct: 62 YPGAQYP---PSGYPPSQGGYPPGAYPPSGYPQQPGYPPAGYPG 102
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 28.3 bits (60), Expect = 8.7
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +2
Query: 317 EW-GCSTWLVSSERLWGPDVVLLNAAATTAGDYALRARVSNNGSVSWI--KRLDISTPI 484
EW G L E +GP ++ + A + D+A + V+ N V WI K+ D P+
Sbjct: 164 EWQGGPIILAQVENEYGPMESVMGSGAKSYVDWAAKMAVATNAGVPWIMCKQDDAPDPV 222
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +1
Query: 76 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,892,483
Number of Sequences: 37544
Number of extensions: 500088
Number of successful extensions: 1651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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