Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_P14
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.7  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    27   3.5  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   8.1  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   8.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -2

Query: 664 PHHPPIRGGAPPDRTPDVLEGAGSKSRPLP 575
           P   PI GG PP   P  + GAG    P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 4/100 (4%)
 Frame = -3

Query: 654 PPL--EAARHLIGPPTFWKEPAQRAGRCHQPRAQLXKVSAE--VPPTVQFEAEVPKTGHP 487
           PP+  E   H+  PP    EP +     H P   +     E   PP +  E        P
Sbjct: 288 PPMHHEPGEHM-PPPPMHHEPGE-----HMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341

Query: 486 DPDADASDHEVGTHRRRPSRPVKHQGLGFVERHLEPQPSD 367
               +  +HE   H R P     H+G    E H  P+  +
Sbjct: 342 FKHHELEEHEGPEHHRGPEDKEHHKGPKDKEHHKGPKDKE 381


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -3

Query: 522 QFEAEVPKTGHPDPDADASDHEVGTHRRRPSRPVKHQG 409
           +F   +P  G   PD     HE   H  R  RPV H G
Sbjct: 291 KFPRPIPHNG-TKPDHKPWKHEEHCHHGRFPRPVPHNG 327


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 540 EVPPTVQFEAEVPKTGHPDPDADASDHEVGTHRR 439
           E+P   Q E E   T  PD  ADA + E+   +R
Sbjct: 550 EIPNETQTEDEQDGTNTPDNRADAEERELTRSQR 583


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,223,680
Number of Sequences: 5004
Number of extensions: 68910
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)