Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_P14
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical ...    31   1.1  
U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical pr...    27   1.4  
Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical...    29   3.3  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.6  

>AC017117-3|AAF16619.1|  339|Caenorhabditis elegans Hypothetical
           protein F43C11.9 protein.
          Length = 339

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 564 AQLXKVSAEVPPTVQFEAEVPKTGHPDPDADASDHEVGTHRRRPSRP 424
           +QL   SA  PP+   +    ++G P  DAD+S  EV   +R+P  P
Sbjct: 239 SQLEPTSASQPPSRVDQILKSRSGLPTKDADSSS-EVAPRKRKPKSP 284


>U49947-6|AAA93424.1|   85|Caenorhabditis elegans Hypothetical
           protein C30G4.5 protein.
          Length = 85

 Score = 27.5 bits (58), Expect(2) = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 558 LXKVSAEVPPTVQFEAEVPKTGHPDPD 478
           L KV+ + PPT+  E E PK  +  PD
Sbjct: 9   LRKVNEQQPPTIIEEDETPKRANRPPD 35



 Score = 22.2 bits (45), Expect(2) = 1.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 441 RRPSRPVKHQGLGFVERHLEPQPSDPSDD 355
           +R +RP   QG   ++       SD SDD
Sbjct: 28  KRANRPPDLQGFSILDEKWRSSCSDDSDD 56


>Z92797-1|CAB07234.1|  552|Caenorhabditis elegans Hypothetical
           protein H25P06.1 protein.
          Length = 552

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 316 RESARLACAGVAHVVTRIRRLGLEVALD 399
           R SA LA A +A V+ R+RR  + VA+D
Sbjct: 411 RRSANLAAAAIACVLNRVRRPNMLVAID 438


>AL132898-14|CAC14406.1| 1641|Caenorhabditis elegans Hypothetical
           protein Y59A8B.1a protein.
          Length = 1641

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
 Frame = -3

Query: 606 KEPAQRAGRCHQPRAQLXKVSAEVPPTVQFEAEVPKTGHPDPDADASDHEVGTHRRRPSR 427
           KEP  R     +PR +  +    V      +AE P+ G+    A A  HE     R+ S 
Sbjct: 483 KEPETRP----EPRPEPKQNGYHVKQAEPLQAEPPQNGYRLAAAQALQHE----PRQASE 534

Query: 426 PVKHQGLGFVERHLEPQPSDPSDDVCH--ACARQTGRLPVVPPR------SHDQRVVGVT 271
           P+         ++++P+PS  + ++      A Q  R    PP            ++ V+
Sbjct: 535 PL---------QNVQPEPSKQASELVQNGYAAPQEPRRATPPPEPLRNELPKHSDLLNVS 585

Query: 270 DYAQPGE-GSPNDAPQDPVVA 211
             ++P E   P+DAP++P VA
Sbjct: 586 KPSEPAEPPKPSDAPREPEVA 606


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 5/125 (4%)
 Frame = -3

Query: 600 PAQRAGRCHQPRAQLXKV---SAEVPPTVQFEAEVPKTGHPDPDADASDHEVGTHRRRPS 430
           P ++ G    P A +      +A  PP  +F    P+         A    + +H    S
Sbjct: 222 PIEQFGAIPPPNATIPSFPTSNAASPPVQEFAPPPPQ--QQQQQFQAPPPPMASHSSISS 279

Query: 429 RPVKHQGLGFVERHLEPQPSDPSDDVCHAC--ARQTGRLPVVPPRSHDQRVVGVTDYAQP 256
            PV+ QG    ++   P PS P  +        +Q  +    PP+   Q+  G      P
Sbjct: 280 TPVQQQGFAPPQQFGGPPPSGPPSEYGGYAPPQQQQQQFGAPPPQGAPQQGFGAPPQGPP 339

Query: 255 GEGSP 241
             G P
Sbjct: 340 QGGPP 344


>Z70203-2|CAA94105.1|  685|Caenorhabditis elegans Hypothetical
           protein C05G5.2 protein.
          Length = 685

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = -3

Query: 537 VPPTVQFEAEVPKTGHPDPDADASDHEVGTHRRRPSRPVKHQGLGFVERHLEPQPSDPS 361
           V P V+F+    K+   D D+D+    + T  + P  P         +  +EP  S+P+
Sbjct: 539 VIPKVEFKKPAAKSLFDDSDSDSDLFSLPTKPKTPIAPKNRNSSIVTQPEMEPSSSEPA 597


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical protein
            F26C11.3 protein.
          Length = 1317

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +2

Query: 197  ACGTSATTGSCGASFGDPSPG*A*SVTPTTRWSWLRGGTTGSLP 328
            A G  AT+ +   S    SP  + +  PTT ++W  GGTT +LP
Sbjct: 913  AQGCKATSST---SLKPTSPSSSTASPPTTTYNWPTGGTTRTLP 953



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +2

Query: 275 TPTTRWSWLRGGTTGSLP 328
           TPTT ++W  GGTT  LP
Sbjct: 487 TPTTTYNWPTGGTTWMLP 504


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 448 PQAAPVPARETSGPGFCRAPPRAPTVGS**RRVPRLRTPDGQTPGSP 308
           P   P+P      PG    PP  P+ G      P    P G+TPG P
Sbjct: 268 PSVTPMPPPMPPTPGMTPRPPPPPSSG---MWPPPPPPPPGRTPGPP 311


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -2

Query: 448 PQAAPVPARETSGPGFCRAPPRAPTVGS**RRVPRLRTPDGQTPGSP 308
           P   P+P      PG    PP  P+ G      P    P G+TPG P
Sbjct: 278 PSVTPMPPPMPPTPGMTPRPPPPPSSG---MWPPPPPPPPGRTPGPP 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,447,116
Number of Sequences: 27780
Number of extensions: 481395
Number of successful extensions: 1602
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)