Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_P13
         (871 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical pr...    31   1.4  
U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak k...    31   1.4  
U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak k...    31   1.4  
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr...    30   2.5  
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr...    30   2.5  
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.      30   2.5  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   3.3  
L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeo...    28   7.5  
AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene...    28   7.5  
U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    28   10.0 
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    28   10.0 

>Z46791-5|CAA86755.2|  948|Caenorhabditis elegans Hypothetical
           protein C09G5.6 protein.
          Length = 948

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 516 RPYASSHPPLAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 644
           RPY    PP   +  S+ ++    + P  P  T    NP  PY
Sbjct: 172 RPYPPQQPPSTSAPHSSPNNRTSLYNPQPPPKTGYPTNPRVPY 214


>U00046-6|AAN65305.1|  422|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform b protein.
          Length = 422

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 306 GHLNNGFHHTTSSPQLRGFWHRKQ 329


>U00046-5|AAC47047.4|  516|Caenorhabditis elegans Mammalian zak
           kinase homolog protein1, isoform a protein.
          Length = 516

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 222 GTVSSTFDHPFSTPVLRSYWHRNQ 293
           G +++ F H  S+P LR +WHR Q
Sbjct: 400 GHLNNGFHHTTSSPQLRGFWHRKQ 423


>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
            K04G2.8b protein.
          Length = 1188

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSRQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 807  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 866

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 867  YLEPEPERRSHS 878


>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
            K04G2.8a protein.
          Length = 1186

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSRQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
          Length = 1186

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
 Frame = +3

Query: 225  TVSSTFDHPFSTPVLRSYWHRNQIEQCHCAITTERLLHH---KRLP--RRVSRQS*GCRF 389
            T S  + HP ++P+ +S  HR Q  +   A   +RLL       +P  R +S +  G + 
Sbjct: 805  TSSPAWSHPDTSPIPKSSSHRTQPNRRQDASDADRLLMESIMSEMPKSRIISPRLAGTQQ 864

Query: 390  SFRP*PQNTSHS 425
               P P+  SHS
Sbjct: 865  YLEPEPERRSHS 876


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 357
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>L14730-2|AAB37562.2|  187|Caenorhabditis elegans C.elegans homeobox
           protein 16 protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 617
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


>AY647457-1|AAT67384.1|  187|Caenorhabditis elegans homeobox gene 16
           protein.
          Length = 187

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 513 SRPYASSHPPLAISATSTRSSNPRFHTPT-TPDLTS 617
           S PY    P ++  ATS  S +P F +P  TP++ S
Sbjct: 12  SSPYPCPSPTISTPATSPSSISPTFASPNGTPNIAS 47


>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 471 IDSFNCDVSSSPTKVNCDWYFEARGGRKNDSLKIDE 364
           ++  +C V+S P K  CD   + R GR   ++K+ +
Sbjct: 156 VEPLDCPVTSIPAKACCDIKLKPRDGRMFRAVKLQQ 191


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 471 IDSFNCDVSSSPTKVNCDWYFEARGGRKNDSLKIDE 364
           ++  +C V+S P K  CD   + R GR   ++K+ +
Sbjct: 156 VEPLDCPVTSIPAKACCDIKLKPRDGRMFRAVKLQQ 191


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,154
Number of Sequences: 27780
Number of extensions: 339984
Number of successful extensions: 1133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)