Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_P09
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    30   0.39 
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    27   3.6  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    27   4.8  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   4.8  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.3  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 222 VRVHRANTGRSSNELDRQTTELERR 296
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = +1

Query: 91  RMRKRNITVPHDRLAPRNVRSGLPPDSKIVVNLTLHLRHANIRESEST 234
           R+R RNIT+  D++ PR + +   P   +V++L   L H+  R S +T
Sbjct: 279 RLRIRNITLCADKI-PRPLLNSKLPRKTLVLDLDETLIHSVSRGSRTT 325


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 400 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMHN 537
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H+
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIHS 630


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -2

Query: 203 LKCRVRLTTILESGGSPDRTLRGASRS*GTVMLRFRI 93
           LK +   TT +E GG   +TLR    S   V LR RI
Sbjct: 804 LKIQPLRTTSMEPGGETSQTLRVHGPSGSQVKLRLRI 840


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +1

Query: 439 KRLDISTPISMQLDNWPNDMQTCTFKFGSRMHNSDEMDFVIDQKXIRYVRXRSVGCD 609
           K LD S+  SM++++W N       +  SR+H S      + +  IR    +SVG D
Sbjct: 162 KFLDKSSG-SMEIESWDNSTSDSIIESSSRLHES----ISLRENDIRSSDSKSVGWD 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,617
Number of Sequences: 5004
Number of extensions: 59160
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)