Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_P03
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029...    34   0.17 
03_03_0153 - 14910420-14910769,14910946-14911008,14911084-149113...    33   0.23 
12_01_0524 - 4167867-4168445                                           29   3.7  
11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121     29   4.9  
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321...    29   6.5  
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468...    28   8.6  
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    28   8.6  
04_01_0530 - 6928528-6929500,6929514-6930964                           28   8.6  
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298...    28   8.6  

>05_03_0366 -
           13102147-13102281,13102560-13102739,13102791-13102992,
           13104385-13104575
          Length = 235

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 343 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 179
           H P AAA  P VP++    P  L +   S GG GL   S S +  G  + D G+GG
Sbjct: 7   HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61


>03_03_0153 -
           14910420-14910769,14910946-14911008,14911084-14911339,
           14911432-14911522,14911798-14912096,14912177-14912295,
           14922536-14922594,14922676-14922965,14923052-14923567,
           14923634-14923936
          Length = 781

 Score = 33.5 bits (73), Expect = 0.23
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -1

Query: 745 PPSAXPGXXPPGKTFWNIATXASTFATVPGSAPPLDRPVTS 623
           P SA P   PP   FW     +S  A      PPLD   TS
Sbjct: 654 PSSARPSVVPPTAQFWQYTGTSSQAAGTSSQGPPLDHAGTS 694


>12_01_0524 - 4167867-4168445
          Length = 192

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 22/72 (30%), Positives = 32/72 (44%)
 Frame = -1

Query: 340 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 161
           QPS+AA  P   + +    +   +  YSH G    +   S + G  +   G GGG P V 
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160

Query: 160 CEERVDHEGQ*C 125
            EE  + E + C
Sbjct: 161 VEEVEEEEEKEC 172


>11_03_0109 - 10103163-10103262,10103469-10103800,10103963-10104121
          Length = 196

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 664 PWRRWKLPWQCSRMSFXGD 720
           PWRRW  PW+  R+   GD
Sbjct: 140 PWRRWIQPWRQRRVDPVGD 158


>11_06_0411 -
           23230580-23230795,23231407-23231862,23232142-23232195,
           23232251-23232367
          Length = 280

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +1

Query: 241 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 357
           V+ H     R S EL+RQ  ELER+G  L+   G L  +
Sbjct: 89  VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127


>09_04_0190 -
           15443764-15443838,15445360-15445458,15446396-15446891,
           15449436-15449479,15449999-15450104,15450243-15450314,
           15450474-15450588,15451182-15451407
          Length = 410

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 247 VHRANTGRSSNELDRQTTELERRGVG 324
           V+ A   +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +1

Query: 667 WRRWKLPWQCSRMS 708
           W RW L WQC  MS
Sbjct: 636 WARWVLTWQCEAMS 649


>04_01_0530 - 6928528-6929500,6929514-6930964
          Length = 807

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +1

Query: 76  VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 216
           +SP+LCY+ C   RK+       +L+  +  SGLPP++   S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515


>01_01_0386 -
           2985563-2985986,2986301-2986390,2986529-2986668,
           2986798-2986893,2987003-2987042,2987760-2987887
          Length = 305

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 422 RGERSPRRWXQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 300
           R  RSPRR   P     R  + +  R+PA   S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,408,952
Number of Sequences: 37544
Number of extensions: 502188
Number of successful extensions: 1643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)