Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_P02
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    35   0.013
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    32   0.12 
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    28   1.5  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   6.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.9  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    26   7.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   7.9  
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   7.9  
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ...    26   7.9  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 23/76 (30%), Positives = 39/76 (51%)
 Frame = +1

Query: 103 DIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSWPRHVTAGVPQ 282
           DI   FD + H+ LI  L +     R + +IR  L N  +      T +  ++   G PQ
Sbjct: 370 DIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKAL-NAGYL-----TENRYKYDIVGTPQ 423

Query: 283 GSALSPLLFSLYINDI 330
           GS +SP+L ++Y++ +
Sbjct: 424 GSIVSPILANIYLHQL 439


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = +2

Query: 218 RSDIESRERVPGPVTSQPESLKAPPSPRYYSVCISTIYPGLRRPIW-RSSPMTPPSTTRV 394
           ++D+    RVP P  S   ++K+PPS       I +  P L+ P   RSS  +P  T   
Sbjct: 184 KTDLGKPARVPSPKKSLSSTIKSPPSRVKLPTSILSKSPPLKVPNKNRSSTFSPLRTPTS 243

Query: 395 GRRRCFIDDFRPQLPP 442
             +   I D     PP
Sbjct: 244 SSKTFVIVDHSTPSPP 259


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 454 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNN 570
           F+ W+    P+ S  +L ++G PP + LS  L   ++ N
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSELVAAKLKN 298


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 213 VRQVVSYDEHEPVWHSHV 160
           +R+ V YDE EP+W S +
Sbjct: 436 IRECVRYDEDEPLWISEL 453


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 539  ASLSRLGASITPPPAVRPITMYDQPIPWAP 628
            +++  + ASI+ PPAV P   + QP    P
Sbjct: 1290 SNVPAVSASISTPPAVVPTVQHPQPTKQIP 1319


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 230 ESRERVPGPVTSQPESLKAPPSPRYYS 310
           ES E   G      + LKAPP P+Y++
Sbjct: 422 ESEEDEHGMTIGFSKELKAPPDPQYFT 448


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 271 GVPQGSALSPLLFSLYINDI 330
           G+PQGS LS  L   Y+ D+
Sbjct: 703 GIPQGSILSSFLCHFYMEDL 722


>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +2

Query: 641 LGVTLSSRMTFRPHIKTVRDRAAFILGRLYPMICRRSKMSLKNKVTSTK 787
           LG++    M +  H   + D+   +LGR+ P++C R  + +  +  S K
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSRGHVYVVGEANSGK 222


>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 663 LLERVTPKYLTFGAHGMGWSYIVIGRTAGGGVI 565
           +LE     ++T+G  G G +Y V+G     G+I
Sbjct: 95  ILEGFNSCFITYGQKGTGKTYSVVGLRGQPGII 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,625,648
Number of Sequences: 5004
Number of extensions: 81955
Number of successful extensions: 264
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)