Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_O14
         (859 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.39 
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   4.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 4/129 (3%)
 Frame = +2

Query: 350 MHTGTAM---RRLRLRRETSGTHFGGQGLCKAPEKTKEXXXXXXXXXXXXXXPKSTRRDD 520
           M TGT     RRLR RR+  G   G        E  +E               K  + D+
Sbjct: 254 MTTGTTTIPTRRLRKRRQNDGE--GADDRDDDEENEEEEDGRGQSEAE-----KRLKLDE 306

Query: 521 DSDGRPASVGHKEDRGFMKNRACR*TEEE-VVXXXSWTSVRXX*KRNGLVRAKSPTRLLQ 697
           D+DG  + +  ++DRG  +      T+ +         ++       GL+R K    L +
Sbjct: 307 DADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVALDRTPVTQGLLRVKKEEELQE 366

Query: 698 GPSIAGCGG 724
            PS   CGG
Sbjct: 367 APS---CGG 372


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 64  SANAPSMQSRLALSSPDPE 120
           S N P+M S ++ + P+PE
Sbjct: 15  SPNMPTMDSTVSSAKPEPE 33


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 788 REGAPEPXGTTNPQTLVPST 729
           REG P    TT P  +V  T
Sbjct: 409 REGGPPTGATTGPNEIVTCT 428


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 788 REGAPEPXGTTNPQTLVPST 729
           REG P    TT P  +V  T
Sbjct: 395 REGGPPTGATTGPNEIVTCT 414


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 788 REGAPEPXGTTNPQTLVPST 729
           REG P    TT P  +V  T
Sbjct: 429 REGGPPTGATTGPNEIVTCT 448


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 788 REGAPEPXGTTNPQTLVPST 729
           REG P    TT P  +V  T
Sbjct: 378 REGGPPTGATTGPNEIVTCT 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,974
Number of Sequences: 438
Number of extensions: 5165
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27673956
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)