Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_O07
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.054
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.2  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    25   8.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   8.2  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 474 PXXGGXPPPPPPXXXXXXRPP 536
           P  GG PPPPPP       PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPP 776



 Score = 25.8 bits (54), Expect(2) = 0.054
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -2

Query: 394 PPPPPPPXKKXXXGP 350
           PPPPPPP      GP
Sbjct: 761 PPPPPPPPGVAGAGP 775



 Score = 25.4 bits (53), Expect(2) = 0.054
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 GXXPPPPPPP 374
           G  PPPPPPP
Sbjct: 759 GGPPPPPPPP 768



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 GXXPPPPPPP 374
           G  PPPPPPP
Sbjct: 772 GAGPPPPPPP 781



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 GXXPPPPPPP 374
           G  PPPPPPP
Sbjct: 774 GPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 394 PPPPPPPXKKXXXGP 350
           PPPPPPP ++    P
Sbjct: 311 PPPPPPPSRRNRGKP 325


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 GXXPPPPPPP 374
           G  PPPPPPP
Sbjct: 303 GGLPPPPPPP 312



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 483 GGXPPPPPP 509
           GG PPPPPP
Sbjct: 303 GGLPPPPPP 311



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 GXXPPPPPPP 374
           G  PPPPPPP
Sbjct: 304 GLPPPPPPPP 313


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +3

Query: 474 PXXGGXPPPPPPXXXXXXRPP 536
           P     PPPPPP      +PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPP 25



 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -2

Query: 403 GXXPPPPPPP 374
           G  PPPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 94  IFSXTGSPPPWAKP 135
           + S T SP PWAKP
Sbjct: 416 VSSSTSSPAPWAKP 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,239
Number of Sequences: 5004
Number of extensions: 21618
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)