Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_N17
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.8  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -3

Query: 753 PXTXPPPIRGG 721
           P   PPPIRGG
Sbjct: 374 PLPPPPPIRGG 384


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 401  PVVPPRSHDQRVVGVTNYAQPGEGTPYDAPQDPVV 297
            P  PPR+HDQ      +  +  E +  +  +D +V
Sbjct: 1860 PPPPPRNHDQNNSSFNDSKESNEISEAECDRDQLV 1894


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 403 SLPVWRAQAWHTSSQGSDG 459
           S PVWR Q W   + G  G
Sbjct: 549 SAPVWRFQPWGPFTWGGIG 567


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 10 QFSACVPSPTKPYPGRG 60
          Q+  CVP P   Y  RG
Sbjct: 39 QYPGCVPKPIPSYACRG 55


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -1

Query: 344 QPGEGTPYDAPQDPVVADVPQQGAQDRP 261
           QP  G P   P        PQ+G+   P
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNP 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,237
Number of Sequences: 438
Number of extensions: 7841
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)