Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_N09
(901 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 36 5e-04
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 35 0.001
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 35 0.001
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 33 0.003
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 33 0.004
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.011
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 31 0.011
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 31 0.011
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 31 0.014
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 31 0.019
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.025
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 30 0.025
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 30 0.033
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.058
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.076
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 29 0.076
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 28 0.13
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 26 0.41
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 2.9
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 23 5.0
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 23 5.0
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 35.9 bits (79), Expect = 5e-04
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 336 PRERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMX 512
P RLW+PDV++ N+A G Y V NNG+ + + + + +P D
Sbjct: 101 PPHRLWKPDVLMYNSADEGFDGTYPTNVVVKNNGTCLYVPPGIFKSTCKIDITWFPFDDQ 160
Query: 513 TCXFXFG 533
C FG
Sbjct: 161 RCEMKFG 167
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 34.7 bits (76), Expect = 0.001
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +3
Query: 342 ERLWRPDVVLLNAAATTAGDYAL---RARVSNNGSXS*IKRLDISTPISMQLDHWPNDMX 512
ER+WRPD N + + R+S +G RL I M+L ++P D
Sbjct: 115 ERIWRPDTYFYNGKHSYVHTITVPNKLLRISQDGDILYSMRLTIKAKCPMELRNFPMDRQ 174
Query: 513 TCXFXFGFLGC 545
+C G C
Sbjct: 175 SCPLILGSCKC 185
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 34.7 bits (76), Expect = 0.001
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 336 PRERLWRPDVVLLNAAATTAGDYALRAR----VSNNGSXS*IKRLDISTPISMQLDHWPN 503
P +++W+PD+VL N A G+Y +R + + NG + + ++ + ++P
Sbjct: 104 PPDKVWKPDIVLFNNA---DGNYEVRYKSNVLIYPNGDVLWVPPAIYQSSCTIDVTYFPF 160
Query: 504 DMXTCXFXFG 533
D TC FG
Sbjct: 161 DQQTCIMKFG 170
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 33.5 bits (73), Expect = 0.003
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 336 PRERLWRPDVVLL-NAAATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMX 512
P + +WRPD+VL NA A +A + + G + + ++++P D
Sbjct: 106 PSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGLVEWKPPAIYKSSCEIDVEYFPFDEQ 165
Query: 513 TCXFXFG 533
TC FG
Sbjct: 166 TCVLKFG 172
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 33.1 bits (72), Expect = 0.004
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +3
Query: 336 PRERLWRPDVVLL-NAAATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMX 512
P + +WRPD+VL NA A +A ++ G + + ++++P D
Sbjct: 102 PSDHIWRPDIVLYNNADGNFEVTLATKATLNYTGRVEWKPPAIYKSSCEIDVEYFPFDEQ 161
Query: 513 TCXFXFG 533
TC FG
Sbjct: 162 TCVMKFG 168
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.5 bits (68), Expect = 0.011
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V++NGS + + + + +P D C
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 194
Query: 522 FXFG 533
FG
Sbjct: 195 MKFG 198
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 31.5 bits (68), Expect = 0.011
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V++NGS + + + + +P D C
Sbjct: 135 KLWKPDILMYNSADEGFDGTYQTNVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 194
Query: 522 FXFG 533
FG
Sbjct: 195 MKFG 198
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 31.5 bits (68), Expect = 0.011
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = +3
Query: 312 GAAALGWCPRERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSXS*IKRLDISTPIS 479
G + + P E +W PD+VL N A G+Y + +A + G S +
Sbjct: 103 GGVEMLYVPSENIWLPDIVLYNNA---DGNYEVTLMTKATLKYTGDVSWKPPAIYKSSCE 159
Query: 480 MQLDHWPNDMXTCXFXFG 533
+ ++++P D +C FG
Sbjct: 160 INVEYFPFDEQSCIMKFG 177
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 31.1 bits (67), Expect = 0.014
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V++NGS + + + + +P D C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 126
Query: 522 FXFG 533
FG
Sbjct: 127 MKFG 130
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 30.7 bits (66), Expect = 0.019
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +3
Query: 330 WCPRERLWRPDVVLLNAAATTAGDYAL-RARVSNNGSXS*IKRLDISTPISMQLDHWPND 506
+ P E +W PD+VL N A G + +A + G + + + ++P D
Sbjct: 96 YVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFD 155
Query: 507 MXTCXFXFG 533
TC FG
Sbjct: 156 QQTCFMKFG 164
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 30.3 bits (65), Expect = 0.025
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V+++GS + + M + +P D C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDIAWFPFDDQHCD 126
Query: 522 FXFG 533
FG
Sbjct: 127 MKFG 130
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 30.3 bits (65), Expect = 0.025
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +3
Query: 336 PRERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSXS*IKRLDISTPISMQLDHWPN 503
P + +WRPD+VL N A G+Y + +A V +G + S+ ++ +P
Sbjct: 106 PSDHIWRPDIVLYNNA---DGNYEVTLMTKATVYYSGLVVWQPPAVYKSSCSIDVEFFPY 162
Query: 504 DMXTCXFXFG 533
D+ TC G
Sbjct: 163 DVQTCVLKLG 172
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 29.9 bits (64), Expect = 0.033
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V+++GS + + M + +P D C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKMDVAWFPFDDQHCD 126
Query: 522 FXFG 533
FG
Sbjct: 127 MKFG 130
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 29.1 bits (62), Expect = 0.058
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V+++GS + + + + +P D C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFPFDDQHCD 126
Query: 522 FXFG 533
FG
Sbjct: 127 MKFG 130
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.076
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V+++GS + + + + +P D C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFKSTCKIDIAWFPFDDQHCD 126
Query: 522 FXFG 533
FG
Sbjct: 127 MKFG 130
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 28.7 bits (61), Expect = 0.076
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 RLWRPDVVLLNAA-ATTAGDYALRARVSNNGSXS*IKRLDISTPISMQLDHWPNDMXTCX 521
+LW+PD+++ N+A G Y V+++GS + + + + +P D C
Sbjct: 67 KLWKPDILMYNSADEGFDGTYQTSVVVTHDGSCLYVPPGIFGSTCKIDIAWFPFDDQHCD 126
Query: 522 FXFG 533
FG
Sbjct: 127 MKFG 130
Score = 22.2 bits (45), Expect = 6.6
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 263 LQMNWIDKRLXXNAGEWG 316
L++ W+D L N E+G
Sbjct: 39 LKLEWVDYNLQWNESEYG 56
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 27.9 bits (59), Expect = 0.13
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Frame = +3
Query: 336 PRERLWRPDVVLLNAAATTAGDYAL----RARVSNNGSXS*IKRLDISTPISMQLDHWPN 503
P E +W PD+VL N A G+Y + +A + + G + + ++++P
Sbjct: 98 PSEHIWLPDIVLYNNA---DGNYEVTIMTKAILHHTGKVVWKPPAIYKSFCEIDVEYFPF 154
Query: 504 DMXTCXFXFG 533
D TC FG
Sbjct: 155 DEQTCFMKFG 164
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 26.2 bits (55), Expect = 0.41
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Frame = +3
Query: 336 PRERLWRPDVVLLNAAATTAGDYALRAR--VSNNGSXS*IKRLDISTPISMQLDHWPNDM 509
P R+WRPD +L N A + VS+ G + + + ++ +P D
Sbjct: 83 PYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIFRSSCDIDVEFFPFDE 142
Query: 510 XTC 518
C
Sbjct: 143 QRC 145
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 23.4 bits (48), Expect = 2.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +3
Query: 309 NGAAALGWCPRERLWRPDVVLLNAAATTAGDYALRARVSNNGS 437
NG A+ C +PD++ + A + GD +V NG+
Sbjct: 17 NGTGAVVECQARGNPQPDIIWVRADGSAVGDVPGLRQVLPNGN 59
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 22.6 bits (46), Expect = 5.0
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 514 VCMSL--GQWSNCIEIGVLMSKRF 449
+CM L G WS C++ V M + F
Sbjct: 283 ICMMLLIGHWSGCLQFLVPMLQGF 306
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 22.6 bits (46), Expect = 5.0
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Frame = -1
Query: 514 VCMSL--GQWSNCIEIGVLMSKRF 449
+CM L G WS C++ V M + F
Sbjct: 251 ICMMLLIGHWSGCLQFLVPMLQGF 274
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,493
Number of Sequences: 438
Number of extensions: 3597
Number of successful extensions: 36
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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