Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_N04
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   8.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   8.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 178  VQQDNVYPQAYIRSEIRTLLSLA 246
            VQ +N YP+  +  E+R  L  A
Sbjct: 1163 VQAENAYPEVELDRELRPYLRTA 1185


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 230 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 349
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 233 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 278


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 230 LYSHW---RDVFEH---VRSTAKKKHYADQNTSSGTPQERECSIRK 349
           +YS+W   + V  H   +R  AKK + A   +S       EC + K
Sbjct: 109 IYSYWFIIQAVAAHEKNMREQAKKMNVASLRSSENQNTSAECKLAK 154


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 748 VCLLAGARSHRTCS-VIGIESSRF*NFSDNSQSHV 647
           +C++       T + +IGI ++ F NF D    +V
Sbjct: 7   ICIVGSGNWGSTIAKIIGINAANFSNFEDRVTMYV 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,265
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)