Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_N01
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.9  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   2.6  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   4.5  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    27   4.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   7.8  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    26   7.8  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +3

Query: 636 KPGHETVNCR*NLXSTQFNTNNTTRSMTSGSSKQANKKASKFRGGKK 776
           +PG+  +NCR +     F      R    G ++ A++K  +  G  K
Sbjct: 93  RPGNACINCRKHHLDCNFTRTPLKRGPAKGFNRNADEKQKRASGSAK 139


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 195 LPSSLHQK*DQDSTLTGVTCLNMF-EVQQKKKHDADQNTSSGTPQERECSIRKSCNNVSV 371
           LP  L +   ++   T  +C   F EVQ++K+ + D+    G    ++ S+R+  + +  
Sbjct: 27  LPPDLLKDITEEDVGTDDSCNKKFLEVQKQKEDEEDEEILKGVDLTQQDSVREKIHEIQ- 85

Query: 372 TSMEDLSHE 398
            SM  LS +
Sbjct: 86  -SMSQLSEK 93


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 357 NNVSVTSMEDLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNT 482
           +N+SVT+   L +  +V++Y L       CR    AFTNG T
Sbjct: 853 SNISVTNENRLQYIHLVSNYYLNARLSRQCR----AFTNGFT 890


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 779 QFFSPXELACFLVCLLAGARSHRTXSVIGIELSRX*ISATIHSLMSW 639
           QFF P     F + L A A   RT  +IG+ +    I AT+   + W
Sbjct: 285 QFFVPY---LFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGW 328


>SPCC1450.11c |cek1||serine/threonine protein kinase
            Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 465  FTNGNTTRNKLLQEIKASANLK*NRSQ*WICHDEWVVPT 581
            F N   + ++L+  ++ SA +       +IC DE  +PT
Sbjct: 1271 FGNDKVSSSRLMYSVRTSATINSRVPFVYICEDETCIPT 1309


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = +3

Query: 276  QKKKHDADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSHEE---------IVTSYVLAH 428
            +K+K    Q   SG   +   SIRK+C N+ +     L H           +  +Y +A 
Sbjct: 1716 KKQKEYVTQLILSGLLNKNTNSIRKTCMNILLYLRRQLGHHALNPFEANYWVPINYSVAA 1775

Query: 429  VAQFDCRLHHMA 464
               +DC L+  +
Sbjct: 1776 STAYDCHLYEQS 1787


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 9/24 (37%), Positives = 20/24 (83%)
 Frame = +3

Query: 678 STQFNTNNTTRSMTSGSSKQANKK 749
           ST++++NN  +S++SGS+ + +K+
Sbjct: 617 STEWSSNNERQSLSSGSNDEEDKE 640


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,179,469
Number of Sequences: 5004
Number of extensions: 61860
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)