Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_M24
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    27   4.7  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    26   8.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   8.2  

>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 603 VCIASLIALTRFRLHGRLLM 662
           +C+ S+I L R+  HGR+L+
Sbjct: 38  ICLLSVILLLRYTRHGRILL 57


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 418 VHSRVRG-EEFDQKVSLLFRAVGQIVIGLAQWWETRPAK 305
           + S+V G +EF++K++     VGQ ++ L  W E  P +
Sbjct: 57  IQSQVSGIQEFEEKLNEHGYRVGQKLVELVVWRERNPKR 95


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 32   VGGRSRPWYNNASRDAAHLKRSAYVAWDNARRRRDPNISGER 157
            +   S  WYN+ ++   +   S+ V W N+  R   N    R
Sbjct: 3854 LNSNSYKWYNSTTQSVYYNATSSTVPWSNSTFRNTSNTMTSR 3895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,882
Number of Sequences: 5004
Number of extensions: 72712
Number of successful extensions: 187
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)