Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_M24
(887 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 0.93
05_01_0274 - 2119122-2119775,2121457-2121570,2121895-2122203,212... 31 1.6
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 30 2.8
03_06_0642 + 35239658-35240083,35240167-35240238,35240305-352409... 29 3.7
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 29 3.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 4.9
03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092... 29 6.5
08_02_0955 + 22994266-22995630 28 8.6
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 28 8.6
07_03_1263 + 25279899-25279985,25280263-25282372,25282700-252827... 28 8.6
07_03_1187 + 24667044-24667091,24667196-24667274,24667520-246676... 28 8.6
06_01_1159 - 9852316-9852441,9852743-9852838,9852912-9852977,985... 28 8.6
02_01_0073 - 509377-509425,510200-510270,510420-510539,510684-51... 28 8.6
01_06_0324 - 28485196-28486098 28 8.6
01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359 28 8.6
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 31.5 bits (68), Expect = 0.93
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -2
Query: 175 SGVIFPPFP*DVRIPTSPGIIPCHVCGPLEVCSIPAG 65
SG FPP P PTSPG P +V P+G
Sbjct: 75 SGDFFPPAPPTTTTPTSPGTTPSPTTVAADVSKTPSG 111
>05_01_0274 -
2119122-2119775,2121457-2121570,2121895-2122203,
2123743-2123904,2124046-2124129,2124315-2124500
Length = 502
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -3
Query: 426 PPSSTVEFEAKSLTRRSAFSFALWARLSSDLRSGG 322
PPSS VE ++TR F+ A+ A LSS + GG
Sbjct: 423 PPSSVVETMTAAITRDPNFTTAVAAALSSIMAGGG 457
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 29 PVGGRSRPWYNNASRDAAHLKRSA 100
P+GG+ PW NNA D LK+ A
Sbjct: 224 PLGGKGTPWSNNAVMDCPLLKQIA 247
>03_06_0642 +
35239658-35240083,35240167-35240238,35240305-35240919,
35241253-35241435,35241604-35241663,35241733-35241936,
35242497-35242745,35243609-35243707,35243760-35243858,
35244463-35244480,35244668-35244862,35244981-35245073,
35245265-35245531,35245884-35246102
Length = 932
Score = 29.5 bits (63), Expect = 3.7
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 119 ARRRRDPNISGERRKYNAASRSYKKVIAKAKSEHVARVGERLKSYPSGSRAFWS-LAKAA 295
A RRRDP +G RR + + + +K A A A+V KS S + WS + A
Sbjct: 85 APRRRDPRYAGVRRG-DVRTLTAEKAAAAAAVPTAAQV-HGSKSAASATTLRWSGMVSVA 142
Query: 296 EGNFCRSSLPPLRKS-DDNLAHSAKEKADLLVKL 394
C SSL S D + H + A+ KL
Sbjct: 143 AIVLCFSSLVRSNSSLHDQVHHLKAQLAEATTKL 176
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 41 RSRPWYNNASRDAAHLKRSAYVAWDNARRRRDPNISGERRKYNAASRSY 187
R RPW NN+S ++ +R Y D R D G R+++ R Y
Sbjct: 1278 RPRPWSNNSS---SYPERYRYDGHDRDHHRHDRRHHGHDRRHHFDDRGY 1323
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = -1
Query: 224 QRAPTSPWQLPSCRTWKRRYISAFPLRC*DPDVSWHYPMPRMRTA 90
+RAP WQ P CRT K +S L D D S RMRT+
Sbjct: 64 KRAPPGNWQCPRCRTKK---VSLKLLDNADADTSKRERTRRMRTS 105
>03_02_0971 -
12807981-12808094,12808949-12809053,12809236-12809295,
12809399-12809537,12809648-12809832,12809926-12810009,
12810093-12810215,12810617-12810796,12811017-12811092,
12811178-12811277,12811355-12811430,12812155-12812244,
12812342-12812449,12813583-12813651,12813751-12813921,
12814002-12814072,12814263-12814360,12814659-12814719,
12814935-12814971,12815217-12815308,12815428-12815549,
12816281-12816414
Length = 764
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 531 DL*TXXXXXXRLTAHCVKQISGRELSHRGMLGGVAPPSSTVEFEAKS 391
DL T LT C+ +I G LSH+ + PSS V F S
Sbjct: 362 DLETVCVKDRLLTNECIDKIVGFALSHQLKHSTIPDPSSDVRFTLSS 408
>08_02_0955 + 22994266-22995630
Length = 454
Score = 28.3 bits (60), Expect = 8.6
Identities = 32/117 (27%), Positives = 42/117 (35%), Gaps = 3/117 (2%)
Frame = +2
Query: 119 ARRRRDPNISGERRKYNAASRSYKKVI---AKAKSEHVARVGERLKSYPSGSRAFWSLAK 289
A RRR P+ S + + SRS K A S A + + A+
Sbjct: 24 AGRRRSPSRSRSPSRSASPSRSRSKTPPHNAAVLSSTPASAAVDFVAASDSDAGADADAR 83
Query: 290 AAEGNFCRSSLPPLRKSDDNLAHSAKEKADLLVKLFASNSTVDDGGATPPSIPRCDS 460
A R P L DN A + E A+ A + D+G ATPP R S
Sbjct: 84 LASPRRSRERSPRLHSDSDNSAAATAEAAEAAAAA-AFDDGDDEGNATPPPRSRRSS 139
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 28.3 bits (60), Expect = 8.6
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 521 VHKSSGPDGIPAVVLKTCAPELTPALTRLYRLSYCTNKVPS 643
+H+ PD +P + C P +L +L+ Y +K+PS
Sbjct: 412 LHRQDDPDHLPMSLESWCPPSDNCSLRKLHITHYYISKLPS 452
>07_03_1263 + 25279899-25279985,25280263-25282372,25282700-25282793,
25283178-25283314,25283419-25283454,25283602-25283642,
25284036-25284125,25284229-25284284,25284947-25285030,
25285072-25285150
Length = 937
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +2
Query: 344 DNLAHSAKEKADLLVKLFASNSTVDDGGATPPSIPRCDSS 463
DNL A E D+ K + + GG P S+PR S+
Sbjct: 891 DNLLCEAHEAGDICQKWVMIDRLMKRGGGAPASLPRLSST 930
>07_03_1187 +
24667044-24667091,24667196-24667274,24667520-24667695,
24668216-24668766,24669080-24669941
Length = 571
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Frame = +3
Query: 327 HCASPMTIWPTAR-------KRRLTFWSNSSPRTRLWTTGVPHHRASPGVI 458
HC +WP+ R K +W N S R +L HH++ G +
Sbjct: 54 HCGVYADVWPSVRMMDQAMVKNHRVYWKNRSHRLKLNNLAGEHHQSFWGTV 104
>06_01_1159 -
9852316-9852441,9852743-9852838,9852912-9852977,
9853091-9853180,9853262-9853373,9853515-9853598,
9853864-9853940,9854823-9854873,9854924-9855031,
9855703-9855774,9856952-9857011,9857808-9857876,
9858005-9858088,9858212-9858295,9859106-9859198,
9859930-9860030,9861155-9861264,9863058-9863104,
9863693-9863778,9863940-9864012,9864454-9864540,
9864650-9865301,9866164-9867182,9867702-9867797
Length = 1180
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 302 NFCRSSLPPLRKSDDNLAHSAKEKADLLVKLFASNSTVDDGGATPPS 442
N C P +RK D ++AHS +++ A+ T+ D +T S
Sbjct: 123 NKCLFGNPNMRKEDGSVAHSMFHRSEKRKSTLAACGTITDEASTSTS 169
>02_01_0073 -
509377-509425,510200-510270,510420-510539,510684-510769,
510843-510915,510996-511718,513752-514081,514124-514210,
514494-515250,515336-515399,515477-515609,515702-515801,
515952-516088,516195-516341,516428-516478,517083-517148
Length = 997
Score = 28.3 bits (60), Expect = 8.6
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -2
Query: 493 CTLCEADIRQGAITPGDARWCGTPVVHSRVRGEEFDQKVSLLFRAVGQ 350
C C ++RQG +T G C T V + G+E Q+ S AVGQ
Sbjct: 255 CLSCCQELRQG-LTTGTVVTCDTAVDVPEIEGKEGLQEGSSHSSAVGQ 301
>01_06_0324 - 28485196-28486098
Length = 300
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 529 LMNVQESELPPDCTLCEADIRQGAITPGDARWCGTPVVHSRVR 401
L++V +S PP+CT CE + + D + G ++ RVR
Sbjct: 229 LLSVNDSRRPPNCTQCEESKGRCGFSQ-DGEFIGCLCLNGRVR 270
>01_06_0171 - 27190072-27190645,27190800-27190955,27191932-27192359
Length = 385
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 572 CAPELTPALTRLYRLSYCTNKVPSSWKTAHVHPIPRRVTGRTH 700
C + P R+ R V ++++ H HPIP + G TH
Sbjct: 200 CTTQKCPVKKRVERSYQDPAVVITTYEGKHTHPIPATLRGSTH 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,382,111
Number of Sequences: 37544
Number of extensions: 648176
Number of successful extensions: 1950
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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