Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_M13
         (876 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   4.9  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   4.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   6.5  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 16/76 (21%), Positives = 36/76 (47%)
 Frame = +3

Query: 6   DYKFMSCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR 185
           DY+   CN  S   Q+ H E ++   ++   L     + D++  +  +++ + G +T + 
Sbjct: 353 DYQDAFCNIVSCSPQTVHPETIIDVSRRRSSL-----ICDVY-GVNESVSYERGSMT-VS 405

Query: 186 LTGEPGTYDDNTDYNI 233
           +T +P T +  T   +
Sbjct: 406 VTSKPSTMERQTQTEV 421


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 282 SGDDSLVSPPPPAHP 326
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 282 SGDDSLVSPPPPAHP 326
           SG +  V+P PP HP
Sbjct: 88  SGQNKAVAPYPPNHP 102


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +3

Query: 354 SLTFKKEFVRN-GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFV 521
           SL   +  +R  GL CG   G A  I A +              LPD I +YL++FV
Sbjct: 289 SLNAARMLIRQEGLLCGGSSG-AALIAALKIAKDIPEEKRMVIILPDGIRNYLTKFV 344


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 249 EYDITTQTVFVSGD-DSLVSPPPP 317
           EY  + Q  FV+ D D  + PPPP
Sbjct: 357 EYSPSVQHEFVTFDLDEPLPPPPP 380


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 15/55 (27%), Positives = 21/55 (38%)
 Frame = +2

Query: 101 FHSISSYRPPLLHQNQHYKSIWTFDLHAPYRRARHL*RQHGLQYCRHLQRVRHHH 265
           + S + + PP  H +QH+ S      H     + H   QHG           HHH
Sbjct: 305 YPSTAGFLPPSYHPHQHHPS----QYHPHRGSSPH--HQHGNHTMGPTMGPPHHH 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,493
Number of Sequences: 438
Number of extensions: 4858
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)