Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_FL5_M11
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    93   6e-20
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    90   3e-19
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   2.7  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    27   3.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 92.7 bits (220), Expect = 6e-20
 Identities = 50/79 (63%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
 Frame = +1

Query: 271 IENPAE-CVRHLITVPSVSDAVLKFAAHTGATPXAGRFTPGAXTNQIQAAFREPRLLIVL 447
           IENPA+ CV  + + P    AVLKFAAHTGAT  AGRFTPG  TN I   +REPRL+IV 
Sbjct: 71  IENPADVCV--ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVT 128

Query: 448 DPAQDHQPITEASYVNIPV 504
           DP  D Q I EAS+VNIPV
Sbjct: 129 DPRADAQAIKEASFVNIPV 147



 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 28/40 (70%), Positives = 31/40 (77%)
 Frame = +2

Query: 506 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 625
           IALC+TDS L  VD+AIP N K   SIGL W+LLAREVLR
Sbjct: 148 IALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLR 187


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 90.2 bits (214), Expect = 3e-19
 Identities = 49/79 (62%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
 Frame = +1

Query: 271 IENPAE-CVRHLITVPSVSDAVLKFAAHTGATPXAGRFTPGAXTNQIQAAFREPRLLIVL 447
           IENPA+ CV  + T      AVLKFAAHTGAT  AGRFTPG  TN I   +REPRL++V 
Sbjct: 70  IENPADVCV--VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVT 127

Query: 448 DPAQDHQPITEASYVNIPV 504
           DP  D Q I EAS+VNIPV
Sbjct: 128 DPRADAQAIKEASFVNIPV 146



 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 29/40 (72%), Positives = 32/40 (80%)
 Frame = +2

Query: 506 IALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLR 625
           IALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR
Sbjct: 147 IALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLR 186


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 594 IKPIEWEDLVLHGIAMSTNLSGESVLHKAIHRNVD 490
           ++ IE E  V+HG      L+    +H+ +H N++
Sbjct: 12  VRKIERERSVIHGALSMKRLTQNQTVHQQLHSNIE 46


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +2

Query: 506 IALCNTDSPLRFVDIAIPCNTKSSHSI 586
           + LC+ +S  RF D+A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,964,592
Number of Sequences: 5004
Number of extensions: 55291
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)