Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_FL5_M09
(840 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 258 5e-69
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 254 5e-68
12_01_0016 + 125052-127145 32 0.65
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 31 1.5
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638... 30 2.0
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 6.1
09_06_0103 + 20873310-20873382,20873530-20873735 29 6.1
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 258 bits (631), Expect = 5e-69
Identities = 119/199 (59%), Positives = 149/199 (74%)
Frame = +3
Query: 51 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 230
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 231 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 410
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 411 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWW 590
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K +SIG ++W
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFW 180
Query: 591 LLAREVLRLRGVLPRDQRW 647
LLAR VL++RG + +W
Sbjct: 181 LLARMVLQMRGTILPGHKW 199
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 668 FFYRDPEESEKDEHQAXEXAVVQLTXXXGP 757
FFYRDPEE+++ E +A +T P
Sbjct: 206 FFYRDPEEAKEQEEEAPAQDFAAITDYTAP 235
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 254 bits (623), Expect = 5e-68
Identities = 116/188 (61%), Positives = 143/188 (76%)
Frame = +3
Query: 84 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 263
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 264 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 443
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 444 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRG 623
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K SIG ++WLLAR VL++RG
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRG 191
Query: 624 VLPRDQRW 647
+ +W
Sbjct: 192 TILPGHKW 199
>12_01_0016 + 125052-127145
Length = 697
Score = 31.9 bits (69), Expect = 0.65
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 731 PQPVPWLGVHPFHFLQGHGRRTKSTTTSPALVTGKHT 621
P P P L + PF F G G T +T +SPA + HT
Sbjct: 17 PPPPPRLVLVPF-FFSGSGSGTNNTASSPAAASSTHT 52
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 683 GHGRRTKSTTTSPALVT-GKHTTKPQHFTCQQPPHQTNRVGRLGVA 549
GH T + T+ ++VT G H + QH Q PP + G + +A
Sbjct: 128 GHQLATATDTSCESVVTSGHHHQQQQHNVVQPPPRDASPAGLMSIA 173
>05_03_0609 -
16161801-16162848,16163525-16163682,16163806-16163835,
16164242-16164323,16164599-16164672
Length = 463
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -2
Query: 596 QQPPHQTNRVGRLGVAWDSNVHKS*WGVCVAQSNDR 489
+ PP Q RVG GV H WG C +S DR
Sbjct: 17 EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVESWDR 52
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 151 TFSAPRWVVAASILVTSSSLRASTSNP 71
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 6.1
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +2
Query: 329 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 436
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,349,108
Number of Sequences: 37544
Number of extensions: 605908
Number of successful extensions: 1643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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